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3txj

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==HEWL co-crystallization with NAG with silicone oil as the cryoprotectant==
==HEWL co-crystallization with NAG with silicone oil as the cryoprotectant==
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<StructureSection load='3txj' size='340' side='right' caption='[[3txj]], [[Resolution|resolution]] 2.48&Aring;' scene=''>
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<StructureSection load='3txj' size='340' side='right'caption='[[3txj]], [[Resolution|resolution]] 2.48&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3txj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TXJ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3txj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TXJ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.48&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2i6z|2i6z]], [[3txb|3txb]], [[3txc|3txc]], [[3txd|3txd]], [[3txe|3txe]], [[3txf|3txf]], [[3txg|3txg]], [[3txh|3txh]], [[3txi|3txi]], [[3txk|3txk]], [[3txl|3txl]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3txj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3txj OCA], [https://pdbe.org/3txj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3txj RCSB], [https://www.ebi.ac.uk/pdbsum/3txj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3txj ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3txj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3txj OCA], [http://pdbe.org/3txj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3txj RCSB], [http://www.ebi.ac.uk/pdbsum/3txj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3txj ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
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[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The International Union of Crystallography has for many years been advocating archiving of raw data to accompany structural papers. Recently, it initiated the formation of the Diffraction Data Deposition Working Group with the aim of developing standards for the representation of these data. A means of studying this issue is to submit exemplar publications with associated raw data and metadata. A recent study on the effects of dimethyl sulfoxide on the binding of cisplatin and carboplatin to histidine in 11 different lysozyme crystals from two diffractometers led to an investigation of the possible effects of the equipment and X-ray diffraction data processing software on the calculated occupancies and B factors of the bound Pt compounds. 35.3 Gb of data were transferred from Manchester to Utrecht to be processed with EVAL. A systematic comparison shows that the largest differences in the occupancies and B factors of the bound Pt compounds are due to the software, but the equipment also has a noticeable effect. A detailed description of and discussion on the availability of metadata is given. By making these raw diffraction data sets available via a local depository, it is possible for the diffraction community to make their own evaluation as they may wish.
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Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.,Tanley SW, Schreurs AM, Helliwell JR, Kroon-Batenburg LM J Appl Crystallogr. 2013 Feb 1;46(Pt 1):108-119. Epub 2012 Dec 8. PMID:23396873<ref>PMID:23396873</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3txj" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Chick]]
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[[Category: Gallus gallus]]
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[[Category: Lysozyme]]
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[[Category: Large Structures]]
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[[Category: Helliwell, J R]]
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[[Category: Helliwell JR]]
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[[Category: Kroon-Batenburg, L M.J]]
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[[Category: Kroon-Batenburg LMJ]]
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[[Category: Schreurs, A M.M]]
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[[Category: Schreurs AMM]]
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[[Category: Tanley, S W.M]]
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[[Category: Tanley SWM]]
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[[Category: Bacterial cell wall lysis]]
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[[Category: Hydrolase]]
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Current revision

HEWL co-crystallization with NAG with silicone oil as the cryoprotectant

PDB ID 3txj

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