This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dyk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:47, 14 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn==
==Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn==
-
<StructureSection load='4dyk' size='340' side='right' caption='[[4dyk]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4dyk' size='340' side='right'caption='[[4dyk]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4dyk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DYK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4dyk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DYK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA3170 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dyk OCA], [http://pdbe.org/4dyk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dyk RCSB], [http://www.ebi.ac.uk/pdbsum/4dyk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dyk ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dyk OCA], [https://pdbe.org/4dyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dyk RCSB], [https://www.ebi.ac.uk/pdbsum/4dyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dyk ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9HZ64_PSEAE Q9HZ64_PSEAE]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pseae]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Bhosle, R]]
+
[[Category: Almo SC]]
-
[[Category: Bonanno, J B]]
+
[[Category: Bhosle R]]
-
[[Category: Chamala, S]]
+
[[Category: Bonanno JB]]
-
[[Category: Evans, B]]
+
[[Category: Chamala S]]
-
[[Category: Gizzi, A]]
+
[[Category: Evans B]]
-
[[Category: Hammonds, J]]
+
[[Category: Gizzi A]]
-
[[Category: Hillerich, B]]
+
[[Category: Hammonds J]]
-
[[Category: Kar, A]]
+
[[Category: Hillerich B]]
-
[[Category: Lafleur, J]]
+
[[Category: Kar A]]
-
[[Category: Love, J]]
+
[[Category: Lafleur J]]
-
[[Category: Morisco, L L]]
+
[[Category: Love J]]
-
[[Category: Structural genomic]]
+
[[Category: Morisco LL]]
-
[[Category: Raushel, F M]]
+
[[Category: Raushel FM]]
-
[[Category: Seidel, R D]]
+
[[Category: Seidel RD]]
-
[[Category: Sojitra, S]]
+
[[Category: Sojitra S]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Vetting, M W]]
+
[[Category: Vetting MW]]
-
[[Category: Villigas, G]]
+
[[Category: Villigas G]]
-
[[Category: Wasserman, S R]]
+
[[Category: Wasserman SR]]
-
[[Category: Zencheck, W D]]
+
[[Category: Zencheck WD]]
-
[[Category: Adenosine deaminase]]
+
-
[[Category: Amidohydrolase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: Psi-biology]]
+

Current revision

Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn

PDB ID 4dyk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools