This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4gkh
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:4gkh.png|left|200px]] | ||
| - | + | ==Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NA-PP1== | |
| + | <StructureSection load='4gkh' size='340' side='right'caption='[[4gkh]], [[Resolution|resolution]] 1.86Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4gkh]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii_AYE Acinetobacter baumannii AYE]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GKH FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.863Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0J9:1-TERT-BUTYL-3-(NAPHTHALEN-1-YL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE'>0J9</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=KAN:KANAMYCIN+A'>KAN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gkh OCA], [https://pdbe.org/4gkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gkh RCSB], [https://www.ebi.ac.uk/pdbsum/4gkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gkh ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B0VD92_ACIBY B0VD92_ACIBY] | ||
| - | == | + | ==See Also== |
| - | + | *[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | [[ | + | [[Category: Acinetobacter baumannii AYE]] |
| - | [[Category: Acinetobacter baumannii]] | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Anderson WF]] |
| - | [[Category: Anderson | + | [[Category: Capretta A]] |
| - | [[Category: | + | [[Category: Di Leo R]] |
| - | [[Category: | + | [[Category: Egorova O]] |
| - | [[Category: Egorova | + | [[Category: Evdokimova E]] |
| - | [[Category: Evdokimova | + | [[Category: Minasov G]] |
| - | + | [[Category: Savchenko A]] | |
| - | [[Category: Minasov | + | [[Category: Shakya T]] |
| - | [[Category: Savchenko | + | [[Category: Spanogiannopoulos P]] |
| - | [[Category: Shakya | + | [[Category: Stogios PJ]] |
| - | [[Category: Spanogiannopoulos | + | [[Category: Todorovic N]] |
| - | [[Category: Stogios | + | [[Category: Wawrzak Z]] |
| - | [[Category: Todorovic | + | [[Category: Wright GD]] |
| - | [[Category: Wawrzak | + | |
| - | [[Category: Wright | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NA-PP1
| |||||||||||
