This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gcf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 20 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gcf.jpg|left|200px]]
 
-
<!--
+
==Terminal oxygenase of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177==
-
The line below this paragraph, containing "STRUCTURE_3gcf", creates the "Structure Box" on the page.
+
<StructureSection load='3gcf' size='340' side='right'caption='[[3gcf]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gcf]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Nocardioides_aromaticivorans Nocardioides aromaticivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GCF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-
{{STRUCTURE_3gcf| PDB=3gcf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gcf OCA], [https://pdbe.org/3gcf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gcf RCSB], [https://www.ebi.ac.uk/pdbsum/3gcf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gcf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2HWI0_9ACTN Q2HWI0_9ACTN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gc/3gcf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gcf ConSurf].
 +
<div style="clear:both"></div>
-
===Terminal oxygenase of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177===
+
==See Also==
-
 
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19616558}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 19616558 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_19616558}}
+
-
 
+
-
==About this Structure==
+
-
3GCF is a 15 chains structure of sequences from [http://en.wikipedia.org/wiki/Nocardioides_aromaticivorans Nocardioides aromaticivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GCF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19616558</ref><references group="xtra"/>
+
[[Category: Nocardioides aromaticivorans]]
[[Category: Nocardioides aromaticivorans]]
-
[[Category: Inoue, K.]]
+
[[Category: Inoue K]]
-
[[Category: Nojiri, H.]]
+
[[Category: Nojiri H]]
-
[[Category: 2fe-2]]
+
-
[[Category: Carbazole]]
+
-
[[Category: Dioxygenase]]
+
-
[[Category: Electron transfer]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rieske oxygenase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 16 08:57:52 2009''
+

Current revision

Terminal oxygenase of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177

PDB ID 3gcf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gcf"
Personal tools