This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qyy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:35, 20 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3qyy.png|left|200px]]
 
-
{{STRUCTURE_3qyy| PDB=3qyy | SCENE= }}
+
==A Novel Interaction Mode between a Microbial GGDEF Domain and the Bis-(3, 5 )-cyclic di-GMP==
-
 
+
<StructureSection load='3qyy' size='340' side='right'caption='[[3qyy]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
===A Novel Interaction Mode between a Microbial GGDEF Domain and the Bis-(3, 5 )-cyclic di-GMP===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3qyy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QYY FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_22120736}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qyy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qyy OCA], [https://pdbe.org/3qyy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qyy RCSB], [https://www.ebi.ac.uk/pdbsum/3qyy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qyy ProSAT]</span></td></tr>
-
[[3qyy]] is a 2 chain structure of [[Response regulator]] with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QYY OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8P559_XANCP Q8P559_XANCP]
==See Also==
==See Also==
-
*[[Response regulator|Response regulator]]
+
*[[Diguanylate cyclase|Diguanylate cyclase]]
-
 
+
*[[Response regulator 3D structure|Response regulator 3D structure]]
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:022120736</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Xanthomonas campestris pv. campestris]]
[[Category: Xanthomonas campestris pv. campestris]]
-
[[Category: Chin, K H.]]
+
[[Category: Chin K-H]]
-
[[Category: Chou, S H.]]
+
[[Category: Chou S-H]]
-
[[Category: Yang, C Y.]]
+
[[Category: Yang C-Y]]
-
[[Category: C-di-gmp]]
+
-
[[Category: Competitive inhibition]]
+
-
[[Category: Dgc]]
+
-
[[Category: Ggdef]]
+
-
[[Category: Signaling protein-inhibitor complex]]
+
-
[[Category: Xanthomonas campestri]]
+

Current revision

A Novel Interaction Mode between a Microbial GGDEF Domain and the Bis-(3, 5 )-cyclic di-GMP

PDB ID 3qyy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools