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4ntz

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Crystal structure of Adenylate kinase from Streptococcus pneumoniae

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Retrieved from "http://52.214.119.220/wiki/index.php/4ntz"

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 <StructureSection load='4ntz' size='340' side='right'caption='[[4ntz]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4ntz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Strp2 Strp2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NTZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NTZ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4ntz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_D39 Streptococcus pneumoniae D39]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NTZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NTZ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.69&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nu0|4nu0]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">adk, SPD_0214 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=373153 STRP2])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ntz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ntz OCA], [https://pdbe.org/4ntz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ntz RCSB], [https://www.ebi.ac.uk/pdbsum/4ntz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ntz ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ntz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ntz OCA], [http://pdbe.org/4ntz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ntz RCSB], [http://www.ebi.ac.uk/pdbsum/4ntz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ntz ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/KAD_STRP2 KAD_STRP2]] Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism (By similarity).
+[https://www.uniprot.org/uniprot/KAD_STRP2 KAD_STRP2] Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism (By similarity).
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-Streptococcus pneumoniae (pneumococcus) infection causes more than 1.6 million deaths worldwide. Pneumococcal growth is a prerequisite for its virulence and requires an appropriate supply of cellular energy. Adenylate kinases constitute a major family of enzymes that regulate cellular ATP levels. Some bacterial adenylate kinases (AdKs) are known to be critical for growth, but the physiological effects of AdKs in pneumococci have been poorly understood at the molecular level. Here, by crystallographic and functional studies, we report that the catalytic activity of adenylate kinase from S . pneumoniae (SpAdK) serotype 2 D39 is essential for growth. We determined the crystal structure of SpAdK in two conformations: ligand-free open form and closed in complex with a two-substrate mimic inhibitor adenosine pentaphosphate (Ap5A). Crystallographic analysis of SpAdK reveals Arg-89 as a key active site residue. We generated a conditional expression mutant of pneumococcus in which the expression of the adk gene is tightly regulated by fucose. The expression level of adk correlates with growth rate. Expression of the wild-type adk gene in fucose-inducible strains rescued a growth defect, but expression of the Arg-89 mutation did not. SpAdK increased total cellular ATP levels. Furthermore, lack of functional SpAdK caused a growth defect in vivo. Taken together, our results demonstrate that SpAdK is essential for pneumococcal growth in vitro and in vivo.
-Adenylate kinase from Streptococcus pneumoniae is essential for growth through its catalytic activity.,Thach TT, Luong TT, Lee S, Rhee DK FEBS Open Bio. 2014 Jul 8;4:672-82. doi: 10.1016/j.fob.2014.07.002. eCollection, 2014. PMID:25180151<ref>PMID:25180151</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 4ntz" style="background-color:#fffaf0;"></div>
 ==See Also==
 *[[Adenylate kinase 3D structures|Adenylate kinase 3D structures]]
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Adenylate kinase]]
 [[Category: Large Structures]]
-[[Category: Strp2]]
+[[Category: Streptococcus pneumoniae D39]]
-[[Category: Lee, S H]]
+[[Category: Lee SH]]
-[[Category: Luong, T T]]
+[[Category: Luong TT]]
-[[Category: Rhee, D K]]
+[[Category: Rhee DK]]
-[[Category: Thach, T T]]
+[[Category: Thach TT]]
-[[Category: Amp/atp binding]]
-[[Category: Capsular polysaccharide]]
-[[Category: Core]]
-[[Category: Growth]]
-[[Category: Nmp/lid domain]]
-[[Category: Phosphotransferase]]
-[[Category: Transferase]]

4ntz

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Crystal structure of Adenylate kinase from Streptococcus pneumoniae

Structural highlights

Function

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