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4y4s

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<StructureSection load='4y4s' size='340' side='right'caption='[[4y4s]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='4y4s' size='340' side='right'caption='[[4y4s]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4y4s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yerps Yerps]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y4S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Y4S FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4y4s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis_IP_32953 Yersinia pseudotuberculosis IP 32953]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y4S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Y4S FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4y1q|4y1q]], [[4xzd|4xzd]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HasA, YPTB0114 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273123 YERPS])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4y4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y4s OCA], [https://pdbe.org/4y4s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4y4s RCSB], [https://www.ebi.ac.uk/pdbsum/4y4s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4y4s ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y4s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y4s OCA], [http://pdbe.org/4y4s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y4s RCSB], [http://www.ebi.ac.uk/pdbsum/4y4s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4y4s ProSAT]</span></td></tr>
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</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q66G68_YERPS Q66G68_YERPS]
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Some Gram-negative pathogens utilize an extracellular heme-binding protein called hemophore to satisfy their needs for iron, a metal element essential for most living things. We report here crystal structures of heme acquisition system A from Yersinia pseudotuberculosis (HasAypt) and its Y75A mutant. The wild-type HasAypt structure revealed that the heme iron is coordinated with Tyr75 and a water molecule. The heme-bound water molecule makes extensive hydrogen bond network that includes Arg40 and Arg144 on the distal heme pocket. Arg40, highly conserved for HasAs from Yersinia species, forms a salt bridge with the propionate side chain of heme, and makes pi-pi stacking and hydrophobic interactions with porphyrin plane. Interestingly, similar Arg-heme interactions are also found for periplasmic heme transporter, PhuT, suggesting that this is an example of a convergent evolution and one of the important interactions for bacterial heme transportation. Heme titration, heme binding kinetics, and the crystal structures of wild-type and Y75A proteins show that, although Tyr75 is primarily important for heme capturing, other interactions with Arg40, Arg144, and hydrophobic residues also contribute for heme acquisition. We also found that HasAypt can form a dimer in solution. The structure of the domain-swapped Y75A HasAypt dimer shows the presence of two low-spin heme molecules coordinated with His84 and His140, and displacement of the Arg40 loop of dimeric Y75A HasAypt results in deformation of the heme-binding pocket. A similar rearrangement of the distal heme loop might occur in heme transfer from HasAypt to HasRypt.
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The crystal structure of heme acquisition system A from Yersinia pseudotuberculosis (HasA): Roles of the axial ligand Tyr75 and two distal arginines in heme binding.,Kanadani M, Sato T, Hino T, Nagano S, Ozaki SI J Inorg Biochem. 2015 Jul 18. pii: S0162-0134(15)30034-9. doi:, 10.1016/j.jinorgbio.2015.07.007. PMID:26210321<ref>PMID:26210321</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4y4s" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Yerps]]
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[[Category: Yersinia pseudotuberculosis IP 32953]]
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[[Category: Hino, T]]
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[[Category: Hino T]]
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[[Category: Ishimaru, Y]]
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[[Category: Ishimaru Y]]
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[[Category: Kanadani, M]]
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[[Category: Kanadani M]]
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[[Category: Muroki, T]]
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[[Category: Muroki T]]
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[[Category: Ozaki, S]]
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[[Category: Ozaki S]]
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[[Category: Sato, T]]
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[[Category: Sato T]]
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[[Category: Wada, Y]]
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[[Category: Wada Y]]
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[[Category: Heme acquisition]]
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[[Category: Heme binding protein]]
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[[Category: Hemophore]]
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Current revision

Crystal Structure of Y75A HasA dimer from Yersinia pseudotuberculosis

PDB ID 4y4s

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