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4zz8

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==X-ray crystal structure of chitosan-binding module 2 in complex with chitotriose derived from chitosanase/glucanase from Paenibacillus sp. IK-5==
==X-ray crystal structure of chitosan-binding module 2 in complex with chitotriose derived from chitosanase/glucanase from Paenibacillus sp. IK-5==
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<StructureSection load='4zz8' size='340' side='right' caption='[[4zz8]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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<StructureSection load='4zz8' size='340' side='right'caption='[[4zz8]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4zz8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'paenibacillus_fukuinensis' 'paenibacillus fukuinensis']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZZ8 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4zz8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paenibacillus_fukuinensis Paenibacillus fukuinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZZ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZZ8 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GCS:D-GLUCOSAMINE'>GCS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2rv9|2rv9]], [[2rva|2rva]], [[4zz5|4zz5]], [[4zxe|4zxe]], [[4zy9|4zy9]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GCS:D-GLUCOSAMINE'>GCS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zz8 OCA], [http://pdbe.org/4zz8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zz8 RCSB], [http://www.ebi.ac.uk/pdbsum/4zz8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zz8 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zz8 OCA], [https://pdbe.org/4zz8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zz8 RCSB], [https://www.ebi.ac.uk/pdbsum/4zz8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zz8 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q93IE7_9BACL Q93IE7_9BACL]
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An antifungal chitosanase/glucanase isolated from the soil bacteriumPaenibacillussp. IK-5 has two CBM32 chitosan-binding modules (DD1 and DD2) linked in tandem at the C-terminus. In order to obtain insights into the mechanism of chitosan recognition, the structures of DD1 and DD2 were solved by NMR spectroscopy and crystallography. DD1 and DD2 both adopted a beta-sandwich fold with several loops in solution as well as in crystals. On the basis of chemical shift perturbations in(1)H-(15)N-HSQC resonances, the chitosan tetramer (GlcN)4was found to bind to the loop region extruded from the core beta-sandwich of DD1 and DD2. The binding site defined by NMR in solution was consistent with the crystal structure of DD2 in complex with (GlcN)3, in which the bound (GlcN)3stood upright on its non-reducing end at the binding site. Glu(14)of DD2 appeared to make an electrostatic interaction with the amino group of the non-reducing end GlcN, and Arg(31), Tyr(36)and Glu(61)formed several hydrogen bonds predominantly with the non-reducing end GlcN. No interaction was detected with the reducing end GlcN. Since Tyr(36)of DD2 is replaced by glutamic acid in DD1, the mutation of Tyr(36)to glutamic acid was conducted in DD2 (DD2-Y36E), and the reverse mutation was conducted in DD1 (DD1-E36Y). Ligand-binding experiments using the mutant proteins revealed that this substitution of the 36th amino acid differentiates the binding properties of DD1 and DD2, probably enhancing total affinity of the chitosanase/glucanase toward the fungal cell wall.
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Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.,Shinya S, Nishimura S, Kitaoku Y, Numata T, Kimoto H, Kusaoke H, Ohnuma T, Fukamizo T Biochem J. 2016 Apr 15;473(8):1085-95. doi: 10.1042/BCJ20160045. Epub 2016 Mar 2. PMID:26936968<ref>PMID:26936968</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4zz8" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Large Structures]]
[[Category: Paenibacillus fukuinensis]]
[[Category: Paenibacillus fukuinensis]]
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[[Category: Fukamizo, T]]
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[[Category: Fukamizo T]]
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[[Category: Kitaoku, Y]]
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[[Category: Kitaoku Y]]
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[[Category: Numata, T]]
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[[Category: Numata T]]
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[[Category: Ohnuma, T]]
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[[Category: Ohnuma T]]
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[[Category: Oi, H]]
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[[Category: Oi H]]
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[[Category: Shinya, S]]
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[[Category: Shinya S]]
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[[Category: B-sandwich]]
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[[Category: Cbm32]]
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[[Category: Chitosan]]
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[[Category: Chitosanase/glucanase]]
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[[Category: Hydrolase]]
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Current revision

X-ray crystal structure of chitosan-binding module 2 in complex with chitotriose derived from chitosanase/glucanase from Paenibacillus sp. IK-5

PDB ID 4zz8

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