This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6ppi
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6ppi is ON HOLD Authors: Description: Category: Unreleased Structures) |
|||
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Kaposi's sarcoma-associated herpesvirus (KSHV), C12 portal dodecamer structure== | |
| + | <SX load='6ppi' size='340' side='right' viewer='molstar' caption='[[6ppi]], [[Resolution|resolution]] 4.70Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6ppi]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PPI FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.7Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ppi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ppi OCA], [https://pdbe.org/6ppi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ppi RCSB], [https://www.ebi.ac.uk/pdbsum/6ppi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ppi ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PORTL_HHV8P PORTL_HHV8P] Forms a portal in the viral capsid through which viral DNA is translocated during DNA packaging. Assembles as a dodecamer at a single fivefold axe of the T=16 icosahedric capsid. Binds to the molecular motor that translocates the viral DNA, termed terminase.[HAMAP-Rule:MF_04012] | ||
| - | + | ==See Also== | |
| - | + | *[[Portal protein 3D structures|Portal protein 3D structures]] | |
| - | + | __TOC__ | |
| - | [[Category: | + | </SX> |
| + | [[Category: Human herpesvirus 8 strain GK18]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Bi GQ]] | ||
| + | [[Category: Dai X]] | ||
| + | [[Category: Gong D]] | ||
| + | [[Category: Jih J]] | ||
| + | [[Category: Liu YT]] | ||
| + | [[Category: Sun R]] | ||
| + | [[Category: Zhou ZH]] | ||
Current revision
Kaposi's sarcoma-associated herpesvirus (KSHV), C12 portal dodecamer structure
| |||||||||
Categories: Human herpesvirus 8 strain GK18 | Large Structures | Bi GQ | Dai X | Gong D | Jih J | Liu YT | Sun R | Zhou ZH
