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1dbo

From Proteopedia

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[[Image:1dbo.png|left|200px]]
 
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{{STRUCTURE_1dbo| PDB=1dbo | SCENE= }}
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==CRYSTAL STRUCTURE OF CHONDROITINASE B==
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<StructureSection load='1dbo' size='340' side='right'caption='[[1dbo]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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===CRYSTAL STRUCTURE OF CHONDROITINASE B===
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1dbo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pedobacter_heparinus Pedobacter heparinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DBO FirstGlance]. <br>
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{{ABSTRACT_PUBMED_10600383}}
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASG:2-DEOXY-2-ACETAMIDO-BETA-D-GALACTOSE-4-SULFATE'>ASG</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=G4D:4-DEOXY-ALPHA-D-GLUCOSE'>G4D</scene>, <scene name='pdbligand=GC4:4-DEOXY-D-GLUCURONIC+ACID'>GC4</scene>, <scene name='pdbligand=GCU:D-GLUCURONIC+ACID'>GCU</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MXY:2-O-METHYL+FUCOSE'>MXY</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
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==About this Structure==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dbo OCA], [https://pdbe.org/1dbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dbo RCSB], [https://www.ebi.ac.uk/pdbsum/1dbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dbo ProSAT]</span></td></tr>
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[[1dbo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pedobacter_heparinus Pedobacter heparinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DBO OCA].
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</table>
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== Function ==
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==Reference==
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[https://www.uniprot.org/uniprot/CSLB_PEDHD CSLB_PEDHD] Cleaves the glycosaminoglycan, dermatan sulfate.
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<ref group="xtra">PMID:010600383</ref><ref group="xtra">PMID:010583954</ref><references group="xtra"/>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/1dbo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dbo ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Pedobacter heparinus]]
[[Category: Pedobacter heparinus]]
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[[Category: Cygler, M.]]
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[[Category: Cygler M]]
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[[Category: Huang, W.]]
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[[Category: Huang W]]
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[[Category: Kim, Y S.]]
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[[Category: Kim YS]]
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[[Category: Li, Y.]]
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[[Category: Li Y]]
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[[Category: Linhardt, R J.]]
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[[Category: Linhardt RJ]]
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[[Category: Matte, A.]]
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[[Category: Matte A]]
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[[Category: Su, H.]]
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[[Category: Su H]]
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[[Category: Active site]]
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[[Category: Beta-elimination]]
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[[Category: Dematan sulfate]]
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[[Category: Lyase]]
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Current revision

CRYSTAL STRUCTURE OF CHONDROITINASE B

PDB ID 1dbo

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