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1dn0

From Proteopedia

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[[Image:1dn0.gif|left|200px]]
 
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{{Structure
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==STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ==
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|PDB= 1dn0 |SIZE=350|CAPTION= <scene name='initialview01'>1dn0</scene>, resolution 2.28&Aring;
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<StructureSection load='1dn0' size='340' side='right'caption='[[1dn0]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1dn0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DN0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DN0 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dn0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dn0 OCA], [https://pdbe.org/1dn0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dn0 RCSB], [https://www.ebi.ac.uk/pdbsum/1dn0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dn0 ProSAT]</span></td></tr>
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}}
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</table>
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== Function ==
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'''STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ'''
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[https://www.uniprot.org/uniprot/Q6PJF2_HUMAN Q6PJF2_HUMAN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==Overview==
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Check<jmol>
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Cold agglutinins (CAs) are IgM autoantibodies characterized by their ability to agglutinate in vitro RBC at low temperatures. These autoantibodies cause hemolytic anemia in patients with CA disease. Many diverse Ags are recognized by CAs, most frequently those belonging to the I/i system. These are oligosaccharides composed of repeated units of N:-acetyllactosamine, expressed on RBC. The three-dimensional structure of the Fab of KAU, a human monoclonal IgM CA with anti-I activity, was determined. The KAU combining site shows an extended cavity and a neighboring pocket. Residues from the hypervariable loops V(H)CDR3, V(L)CDR1, and V(L)CDR3 form the cavity, whereas the small pocket is defined essentially by residues from the hypervariable loops V(H)CDR1 and V(H)CDR2. This fact could explain the V(H)4-34 germline gene restriction among CA. The KAU combining site topography is consistent with one that binds a polysaccharide. The combining site overall dimensions are 15 A wide and 24 A long. Conservation of key binding site residues among anti-I/i CAs indicates that this is a common feature of this family of autoantibodies. We also describe the first high resolution structure of the human IgM C(H)1:C(L) domain. The structural analysis shows that the C(H)1-C(L) interface is mainly conserved during the isotype switch process from IgM to IgG1.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/1dn0_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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1DN0 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DN0 OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==Reference==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dn0 ConSurf].
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Three-dimensional structure of the Fab from a human IgM cold agglutinin., Cauerhff A, Braden BC, Carvalho JG, Aparicio R, Polikarpov I, Leoni J, Goldbaum FA, J Immunol. 2000 Dec 1;165(11):6422-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11086081 11086081]
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Protein complex]]
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[[Category: Large Structures]]
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[[Category: Braden, B.]]
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[[Category: Braden B]]
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[[Category: Carvalho, J G.]]
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[[Category: Carvalho JG]]
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[[Category: Cauerhff, A.]]
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[[Category: Cauerhff A]]
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[[Category: Goldbaum, F.]]
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[[Category: Goldbaum F]]
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[[Category: Leoni, J.]]
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[[Category: Leoni J]]
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[[Category: Polikarpov, I.]]
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[[Category: Polikarpov I]]
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[[Category: antibody]]
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[[Category: cold agglutinin]]
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[[Category: fab]]
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[[Category: human]]
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[[Category: igm]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:41:02 2008''
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Current revision

STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ

PDB ID 1dn0

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