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1dpe

From Proteopedia

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{{Seed}}
 
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[[Image:1dpe.png|left|200px]]
 
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==DIPEPTIDE-BINDING PROTEIN==
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The line below this paragraph, containing "STRUCTURE_1dpe", creates the "Structure Box" on the page.
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<StructureSection load='1dpe' size='340' side='right'caption='[[1dpe]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1dpe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DPE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
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{{STRUCTURE_1dpe| PDB=1dpe | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dpe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dpe OCA], [https://pdbe.org/1dpe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dpe RCSB], [https://www.ebi.ac.uk/pdbsum/1dpe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dpe ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DPPA_ECOLI DPPA_ECOLI] Dipeptide-binding protein of a transport system that can be subject to osmotic shock. DppA is also required for peptide chemotaxis.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/1dpe_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dpe ConSurf].
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<div style="clear:both"></div>
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===DIPEPTIDE-BINDING PROTEIN===
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==See Also==
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*[[ABC transporter 3D structures|ABC transporter 3D structures]]
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__TOC__
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<!--
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_8527431}}, adds the Publication Abstract to the page
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[[Category: Escherichia coli K-12]]
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(as it appears on PubMed at http://www.pubmed.gov), where 8527431 is the PubMed ID number.
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[[Category: Large Structures]]
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-->
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[[Category: Nickitenko AV]]
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{{ABSTRACT_PUBMED_8527431}}
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[[Category: Quiocho FA]]
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[[Category: Trakhanov S]]
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==About this Structure==
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1DPE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DPE OCA].
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==Reference==
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2 A resolution structure of DppA, a periplasmic dipeptide transport/chemosensory receptor., Nickitenko AV, Trakhanov S, Quiocho FA, Biochemistry. 1995 Dec 26;34(51):16585-95. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8527431 8527431]
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[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Nickitenko, A V.]]
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[[Category: Quiocho, F A.]]
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[[Category: Trakhanov, S.]]
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[[Category: Chemotaxis binding proteins for active transport]]
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[[Category: Peptide transport]]
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[[Category: Periplasmic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:25:01 2008''
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Current revision

DIPEPTIDE-BINDING PROTEIN

PDB ID 1dpe

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