This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dpy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:52, 20 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dpy.png|left|200px]]
 
-
{{STRUCTURE_1dpy| PDB=1dpy | SCENE= }}
+
==THREE-DIMENSIONAL STRUCTURE OF A NOVEL PHOSPHOLIPASE A2 FROM INDIAN COMMON KRAIT AT 2.45 A RESOLUTION==
-
 
+
<StructureSection load='1dpy' size='340' side='right'caption='[[1dpy]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
===THREE-DIMENSIONAL STRUCTURE OF A NOVEL PHOSPHOLIPASE A2 FROM INDIAN COMMON KRAIT AT 2.45 A RESOLUTION===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1dpy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bungarus_caeruleus Bungarus caeruleus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DPY FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11286555}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dpy OCA], [https://pdbe.org/1dpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dpy RCSB], [https://www.ebi.ac.uk/pdbsum/1dpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dpy ProSAT]</span></td></tr>
-
[[1dpy]] is a 1 chain structure of [[Phospholipase A2]] with sequence from [http://en.wikipedia.org/wiki/Bungarus_caeruleus Bungarus caeruleus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DPY OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PA2B_BUNCE PA2B_BUNCE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/1dpy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dpy ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Phospholipase A2|Phospholipase A2]]
+
*[[Phospholipase A2 3D structures|Phospholipase A2 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:011286555</ref><references group="xtra"/>
+
[[Category: Bungarus caeruleus]]
[[Category: Bungarus caeruleus]]
-
[[Category: Gourinath, S.]]
+
[[Category: Large Structures]]
-
[[Category: Paramasivam, M.]]
+
[[Category: Gourinath S]]
-
[[Category: Sharma, S.]]
+
[[Category: Paramasivam M]]
-
[[Category: Singh, G.]]
+
[[Category: Sharma S]]
-
[[Category: Singh, T P.]]
+
[[Category: Singh G]]
-
[[Category: Srinivasan, A.]]
+
[[Category: Singh TP]]
-
[[Category: Hydrolase]]
+
[[Category: Srinivasan A]]
-
[[Category: Indian common krait venom]]
+
-
[[Category: Phospholipase a2]]
+
-
[[Category: Refinement]]
+

Current revision

THREE-DIMENSIONAL STRUCTURE OF A NOVEL PHOSPHOLIPASE A2 FROM INDIAN COMMON KRAIT AT 2.45 A RESOLUTION

PDB ID 1dpy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools