This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ds2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:53, 20 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ds2.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF SGPB:OMTKY3-COO-LEU18I==
-
The line below this paragraph, containing "STRUCTURE_1ds2", creates the "Structure Box" on the page.
+
<StructureSection load='1ds2' size='340' side='right'caption='[[1ds2]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ds2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Meleagris_gallopavo Meleagris gallopavo] and [https://en.wikipedia.org/wiki/Streptomyces_griseus Streptomyces griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DS2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1LU:(2S)-2-HYDROXY-4-METHYL-PENTANOIC+ACID'>1LU</scene></td></tr>
-
{{STRUCTURE_1ds2| PDB=1ds2 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ds2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ds2 OCA], [https://pdbe.org/1ds2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ds2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ds2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ds2 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PRTB_STRGR PRTB_STRGR] Has a primary specificity for large aliphatic or aromatic amino acids.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/1ds2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ds2 ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF SGPB:OMTKY3-COO-LEU18I===
+
==See Also==
-
 
+
*[[Proteinase 3D structures|Proteinase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11162096}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 11162096 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11162096}}
+
-
 
+
-
==About this Structure==
+
-
1DS2 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Meleagris_gallopavo Meleagris gallopavo] and [http://en.wikipedia.org/wiki/Streptomyces_griseus Streptomyces griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS2 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:11162096</ref><references group="xtra"/>
+
[[Category: Meleagris gallopavo]]
[[Category: Meleagris gallopavo]]
-
[[Category: Streptogrisin B]]
 
[[Category: Streptomyces griseus]]
[[Category: Streptomyces griseus]]
-
[[Category: Anderson, S.]]
+
[[Category: Anderson S]]
-
[[Category: Bateman, K S.]]
+
[[Category: Bateman KS]]
-
[[Category: Huang, K.]]
+
[[Category: Huang K]]
-
[[Category: James, M N.G.]]
+
[[Category: James MNG]]
-
[[Category: Jr., M Laskowski.]]
+
[[Category: Laskowski Jr M]]
-
[[Category: Lu, W.]]
+
[[Category: Lu W]]
-
[[Category: Qasim, M A.]]
+
[[Category: Qasim MA]]
-
[[Category: Canonical inhibitor]]
+
-
[[Category: Ester bond]]
+
-
[[Category: Omtky3]]
+
-
[[Category: Ovomucoid]]
+
-
[[Category: Protein inhibitor]]
+
-
[[Category: Serine proteinase]]
+
-
[[Category: Sgpb]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:50:10 2009''
+

Current revision

CRYSTAL STRUCTURE OF SGPB:OMTKY3-COO-LEU18I

PDB ID 1ds2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ds2"
Personal tools