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1dw1

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(New page: 200px<br /><applet load="1dw1" size="450" color="white" frame="true" align="right" spinBox="true" caption="1dw1, resolution 1.9&Aring;" /> '''STRUCTURE OF THE CYAN...)
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[[Image:1dw1.gif|left|200px]]<br /><applet load="1dw1" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1dw1, resolution 1.9&Aring;" />
 
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'''STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C'''<br />
 
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==Overview==
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==STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C==
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The photosynthetic bacterium Rhodobacter sphaeroides produces a heme, protein (SHP), which is an unusual c-type cytochrome capable of, transiently binding oxygen during autooxidation. Similar proteins have not, only been observed in other photosynthetic bacteria but also in the, obligate methylotroph Methylophilus methylotrophus and the metal reducing, bacterium Shewanella putrefaciens. A three-dimensional structure of SHP, was derived using the multiple isomorphous replacement phasing method., Besides a model for the oxidized state (to 1.82 A resolution), models for, the reduced state (2.1 A resolution), the oxidized molecule liganded with, cyanide (1. 90 A resolution), and the reduced molecule liganded with, nitric oxide (2.20 A resolution) could be derived. The SHP structure, represents a new variation of the class I cytochrome c fold. The oxidized, state reveals a novel sixth heme ligand, Asn(88), which moves away from, the iron upon reduction or when small molecules bind. The distal side of, the heme has a striking resemblance to other heme proteins that bind, gaseous compounds. In SHP the liberated amide group of Asn(88) stabilizes, solvent-shielded ligands through a hydrogen bond.
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<StructureSection load='1dw1' size='340' side='right'caption='[[1dw1]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1dw1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DW1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DW1 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dw1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dw1 OCA], [https://pdbe.org/1dw1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dw1 RCSB], [https://www.ebi.ac.uk/pdbsum/1dw1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dw1 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SHP_CERS4 SHP_CERS4] High-spin cytochrome. Transiently bind oxygen during autoxidation, which occurs with a half-life of 3 min with a 4-fold excess of O(2). Also binds carbon monoxide, azide and cyanide.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/1dw1_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dw1 ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1DW1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides] with CYN and HEM as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1DW1 OCA].
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*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Crystal structures of an oxygen-binding cytochrome c from Rhodobacter sphaeroides., Leys D, Backers K, Meyer TE, Hagen WR, Cusanovich MA, Van Beeumen JJ, J Biol Chem. 2000 May 26;275(21):16050-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10821858 10821858]
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[[Category: Cereibacter sphaeroides]]
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[[Category: Rhodobacter sphaeroides]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Backers K]]
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[[Category: Backers, K.]]
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[[Category: Cusanovich MA]]
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[[Category: Beeumen, J.J.Van.]]
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[[Category: Hagen WR]]
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[[Category: Cusanovich, M.A.]]
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[[Category: Leys D]]
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[[Category: Hagen, W.R.]]
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[[Category: Meyer TE]]
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[[Category: Leys, D.]]
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[[Category: Van Beeumen JJ]]
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[[Category: Meyer, T.E.]]
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[[Category: CYN]]
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[[Category: HEM]]
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[[Category: asparagine ligation]]
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[[Category: cyanide complex]]
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[[Category: cytochrome c]]
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[[Category: disulfide bridge]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 13:37:59 2007''
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Current revision

STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C

PDB ID 1dw1

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