This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1eis

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:02, 20 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1eis.png|left|200px]]
 
-
<!--
+
==UDA UNCOMPLEXED FORM. CRYSTAL STRUCTURE OF URTICA DIOICA AGGLUTININ, A SUPERANTIGEN PRESENTED BY MHC MOLECULES OF CLASS I AND CLASS II==
-
The line below this paragraph, containing "STRUCTURE_1eis", creates the "Structure Box" on the page.
+
<StructureSection load='1eis' size='340' side='right'caption='[[1eis]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1eis]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Urtica_dioica Urtica dioica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EIS FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-
{{STRUCTURE_1eis| PDB=1eis | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eis OCA], [https://pdbe.org/1eis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eis RCSB], [https://www.ebi.ac.uk/pdbsum/1eis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eis ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9SYR5_URTDI Q9SYR5_URTDI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/1eis_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eis ConSurf].
 +
<div style="clear:both"></div>
-
===UDA UNCOMPLEXED FORM. CRYSTAL STRUCTURE OF URTICA DIOICA AGGLUTININ, A SUPERANTIGEN PRESENTED BY MHC MOLECULES OF CLASS I AND CLASS II===
+
==See Also==
-
 
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10873861}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10873861 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10873861}}
+
-
 
+
-
==About this Structure==
+
-
1EIS is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Urtica_dioica Urtica dioica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EIS OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:10873861</ref><references group="xtra"/>
+
[[Category: Urtica dioica]]
[[Category: Urtica dioica]]
-
[[Category: Bentley, G A.]]
+
[[Category: Bentley GA]]
-
[[Category: Boulot, G.]]
+
[[Category: Boulot G]]
-
[[Category: Damme, E J.M Van.]]
+
[[Category: Peumans WJ]]
-
[[Category: Peumans, W J.]]
+
[[Category: Rovira P]]
-
[[Category: Rovira, P.]]
+
[[Category: Saul FA]]
-
[[Category: Saul, F A.]]
+
[[Category: Truffa-Bachi P]]
-
[[Category: Truffa-Bachi, P.]]
+
[[Category: Van Damme EJM]]
-
[[Category: Hevein domain]]
+
-
[[Category: Lectin]]
+
-
[[Category: Superantigen]]
+
-
[[Category: Uda]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:01:36 2009''
+

Current revision

UDA UNCOMPLEXED FORM. CRYSTAL STRUCTURE OF URTICA DIOICA AGGLUTININ, A SUPERANTIGEN PRESENTED BY MHC MOLECULES OF CLASS I AND CLASS II

PDB ID 1eis

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1eis"
Personal tools