This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ejw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:03, 20 March 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ejw.gif|left|200px]]<br /><applet load="1ejw" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ejw, resolution 1.9&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF WILD-TYPE KLEBSIELLA AEROGENES UREASE AT 298K'''<br />
 
-
==About this Structure==
+
==CRYSTAL STRUCTURE OF WILD-TYPE KLEBSIELLA AEROGENES UREASE AT 298K==
-
1EJW is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes] with <scene name='pdbligand=NI:'>NI</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Urease Urease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.5 3.5.1.5] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EJW OCA].
+
<StructureSection load='1ejw' size='340' side='right'caption='[[1ejw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Klebsiella aerogenes]]
+
== Structural highlights ==
-
[[Category: Protein complex]]
+
<table><tr><td colspan='2'>[[1ejw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EJW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EJW FirstGlance]. <br>
-
[[Category: Urease]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
[[Category: Karplus, P A.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
[[Category: Pearson, M A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ejw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ejw OCA], [https://pdbe.org/1ejw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ejw RCSB], [https://www.ebi.ac.uk/pdbsum/1ejw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ejw ProSAT]</span></td></tr>
-
[[Category: NI]]
+
</table>
-
[[Category: alpha-beta barrel]]
+
== Function ==
-
[[Category: nickel metalloenzyme]]
+
[https://www.uniprot.org/uniprot/URE1_KLEAE URE1_KLEAE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/1ejw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ejw ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:28:36 2008''
+
==See Also==
 +
*[[Urease 3D structures|Urease 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Klebsiella aerogenes]]
 +
[[Category: Large Structures]]
 +
[[Category: Karplus PA]]
 +
[[Category: Pearson MA]]

Current revision

CRYSTAL STRUCTURE OF WILD-TYPE KLEBSIELLA AEROGENES UREASE AT 298K

PDB ID 1ejw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools