This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ekm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:03, 20 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ekm.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI==
-
The line below this paragraph, containing "STRUCTURE_1ekm", creates the "Structure Box" on the page.
+
<StructureSection load='1ekm' size='340' side='right'caption='[[1ekm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ekm]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ogataea_angusta Ogataea angusta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EKM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1ekm| PDB=1ekm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ekm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ekm OCA], [https://pdbe.org/1ekm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ekm RCSB], [https://www.ebi.ac.uk/pdbsum/1ekm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ekm ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMO_PICAN AMO_PICAN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ek/1ekm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ekm ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI===
+
==See Also==
-
 
+
*[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10933787}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10933787 is the PubMed ID number.
+
[[Category: Ogataea angusta]]
-
-->
+
[[Category: Chen Z]]
-
{{ABSTRACT_PUBMED_10933787}}
+
[[Category: Klinman JP]]
-
 
+
[[Category: Li R]]
-
==About this Structure==
+
[[Category: Mathews FS]]
-
1EKM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pichia_angusta Pichia angusta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EKM OCA].
+
[[Category: Schwartz B]]
-
 
+
[[Category: Williams NK]]
-
==Reference==
+
-
Crystal structure at 2.5 A resolution of zinc-substituted copper amine oxidase of Hansenula polymorpha expressed in Escherichia coli., Chen Z, Schwartz B, Williams NK, Li R, Klinman JP, Mathews FS, Biochemistry. 2000 Aug 15;39(32):9709-17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10933787 10933787]
+
-
[[Category: Pichia angusta]]
+
-
[[Category: Single protein]]
+
-
[[Category: Chen, Z.]]
+
-
[[Category: Klinman, J P.]]
+
-
[[Category: Li, R.]]
+
-
[[Category: Mathews, F S.]]
+
-
[[Category: Schwartz, B.]]
+
-
[[Category: Williams, N K.]]
+
-
[[Category: Amine oxidase]]
+
-
[[Category: Quinoprotein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 00:54:02 2008''
+

Current revision

CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI

PDB ID 1ekm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ekm"
Personal tools