This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ewh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1ewh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ewh, resolution 2.35&Aring;" /> '''STRUCTURE OF CYTOCHR...)
Current revision (10:07, 20 March 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ewh.gif|left|200px]]<br /><applet load="1ewh" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ewh, resolution 2.35&Aring;" />
 
-
'''STRUCTURE OF CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII'''<br />
 
-
==Overview==
+
==STRUCTURE OF CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII==
-
The structure of cytochrome f includes an internal chain of five water, molecules and six hydrogen-bonding side chains, which are conserved, throughout the phylogenetic range of photosynthetic organisms from higher, plants, algae, and cyanobacteria. The in vivo electron transfer capability, of Chlamydomonas reinhardtii cytochrome f was impaired in site-directed, mutants of the conserved Asn and Gln residues that form hydrogen bonds, with water molecules of the internal chain [Ponamarev, M. V., and Cramer, W. A. (1998) Biochemistry 37, 17199-17208]. The 251-residue extrinsic, functional domain of C. reinhardtii cytochrome f was expressed in, Escherichia coli without the 35 C-terminal residues of the intact, cytochrome that contain the membrane anchor. Crystal structures were, determined for the wild type and three "water chain" mutants (N168F, Q158L, and N153Q) having impaired photosynthetic and electron transfer, function. The mutant cytochromes were produced, folded, and assembled heme, at levels identical to that of the wild type in the E. coli expression, system. N168F, which had a non-photosynthetic phenotype and was thus most, affected by mutational substitution, also had the greatest structural, perturbation with two water molecules (W4 and W5) displaced from the, internal chain. Q158L, the photosynthetic mutant with the largest, impairment of in vivo electron transfer, had a more weakly bound water at, one position (W1). N153Q, a less impaired photosynthetic mutant, had an, internal water chain with positions and hydrogen bonds identical to those, of the wild type. The structure data imply that the waters of the internal, chain, in addition to the surrounding protein, have a significant role in, cytochrome f function.
+
<StructureSection load='1ewh' size='340' side='right'caption='[[1ewh]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1ewh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EWH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EWH FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ewh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ewh OCA], [https://pdbe.org/1ewh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ewh RCSB], [https://www.ebi.ac.uk/pdbsum/1ewh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ewh ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYF_CHLRE CYF_CHLRE] Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.[HAMAP-Rule:MF_00610]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/1ewh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ewh ConSurf].
 +
<div style="clear:both"></div>
-
==About this Structure==
+
==See Also==
-
1EWH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii] with ACT and HEM as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1EWH OCA].
+
*[[Cytochrome f 3D structures|Cytochrome f 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Interruption of the internal water chain of cytochrome f impairs photosynthetic function., Sainz G, Carrell CJ, Ponamarev MV, Soriano GM, Cramer WA, Smith JL, Biochemistry. 2000 Aug 8;39(31):9164-73. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10924110 10924110]
+
[[Category: Chlamydomonas reinhardtii]]
[[Category: Chlamydomonas reinhardtii]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Carrell, C.J.]]
+
[[Category: Carrell CJ]]
-
[[Category: Cramer, W.A.]]
+
[[Category: Cramer WA]]
-
[[Category: Ponamarev, M.V.]]
+
[[Category: Ponamarev MV]]
-
[[Category: Sainz, G.]]
+
[[Category: Sainz G]]
-
[[Category: Smith, J.L.]]
+
[[Category: Smith JL]]
-
[[Category: Soriano, G.M.]]
+
[[Category: Soriano GM]]
-
[[Category: ACT]]
+
-
[[Category: HEM]]
+
-
[[Category: beta sandwich]]
+
-
[[Category: heme protein]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:22:26 2007''
+

Current revision

STRUCTURE OF CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII

PDB ID 1ewh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ewh"
Personal tools