This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1f0i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:08, 20 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1f0i.png|left|200px]]
 
-
<!--
+
==THE FIRST CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D==
-
The line below this paragraph, containing "STRUCTURE_1f0i", creates the "Structure Box" on the page.
+
<StructureSection load='1f0i' size='340' side='right'caption='[[1f0i]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1f0i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._PMF Streptomyces sp. PMF]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F0I FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1f0i| PDB=1f0i | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f0i OCA], [https://pdbe.org/1f0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f0i RCSB], [https://www.ebi.ac.uk/pdbsum/1f0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f0i ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/P84147_STRSM P84147_STRSM]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f0/1f0i_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f0i ConSurf].
 +
<div style="clear:both"></div>
-
===THE FIRST CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D===
+
==See Also==
-
 
+
*[[Phospholipase D 3D structures|Phospholipase D 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10873862}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10873862 is the PubMed ID number.
+
[[Category: Streptomyces sp. PMF]]
-
-->
+
[[Category: Hough E]]
-
{{ABSTRACT_PUBMED_10873862}}
+
[[Category: Leiros I]]
-
 
+
[[Category: Secundo F]]
-
==About this Structure==
+
[[Category: Servi S]]
-
1F0I is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F0I OCA].
+
[[Category: Zambonelli C]]
-
 
+
-
==Reference==
+
-
The first crystal structure of a phospholipase D., Leiros I, Secundo F, Zambonelli C, Servi S, Hough E, Structure. 2000 Jun 15;8(6):655-67. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10873862 10873862]
+
-
[[Category: Phospholipase D]]
+
-
[[Category: Single protein]]
+
-
[[Category: Streptomyces sp.]]
+
-
[[Category: Hough, E.]]
+
-
[[Category: Leiros, I.]]
+
-
[[Category: Secundo, F.]]
+
-
[[Category: Servi, S.]]
+
-
[[Category: Zambonelli, C.]]
+
-
[[Category: Alpha-beta-alpha-beta-alpha structure]]
+
-
[[Category: Phospholipase d]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 02:18:04 2008''
+

Current revision

THE FIRST CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D

PDB ID 1f0i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools