This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1f18

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:09, 20 March 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1f18.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of yeast copper-zinc superoxide dismutase mutant GLY85ARG==
-
|PDB= 1f18 |SIZE=350|CAPTION= <scene name='initialview01'>1f18</scene>, resolution 1.7&Aring;
+
<StructureSection load='1f18' size='340' side='right'caption='[[1f18]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[1f18]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F18 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F18 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f18 OCA], [https://pdbe.org/1f18 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f18 RCSB], [https://www.ebi.ac.uk/pdbsum/1f18 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f18 ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1jcw|1jcw]], [[1jcv|1jcv]], [[1b4l|1b4l]], [[1yaz|1yaz]], [[1b4t|1b4t]], [[1azv|1azv]], [[1f1a|1F1A]], [[1f1d|1F1D]], [[1f1g|1F1G]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1f18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f18 OCA], [http://www.ebi.ac.uk/pdbsum/1f18 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1f18 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/SODC_YEAST SODC_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f1/1f18_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f18 ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of yeast copper-zinc superoxide dismutase mutant GLY85ARG'''
+
==See Also==
-
 
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1F18 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F18 OCA].
+
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Eisenberg D]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Hart PJ]]
-
[[Category: Eisenberg, D.]]
+
[[Category: Liu H]]
-
[[Category: Hart, P J.]]
+
[[Category: Nersissian AM]]
-
[[Category: Liu, H.]]
+
[[Category: Ogihara NL]]
-
[[Category: Nersissian, A M.]]
+
[[Category: Valentine JS]]
-
[[Category: Ogihara, N L.]]
+
-
[[Category: Valentine, J S.]]
+
-
[[Category: beta barrel]]
+
-
[[Category: cuznsod]]
+
-
[[Category: fal]]
+
-
[[Category: greek key]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 20:13:46 2008''
+

Current revision

Crystal structure of yeast copper-zinc superoxide dismutase mutant GLY85ARG

PDB ID 1f18

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools