This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1gzb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:26, 27 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1gzb.png|left|200px]]
 
-
{{STRUCTURE_1gzb| PDB=1gzb | SCENE= }}
+
==PEROXIDASE==
-
 
+
<StructureSection load='1gzb' size='340' side='right'caption='[[1gzb]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===PEROXIDASE===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1gzb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agaricales_sp._'Arthromyces_ramosus' Agaricales sp. 'Arthromyces ramosus']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GZB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GZB FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_8557120}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gzb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gzb OCA], [https://pdbe.org/1gzb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gzb RCSB], [https://www.ebi.ac.uk/pdbsum/1gzb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gzb ProSAT]</span></td></tr>
-
[[1gzb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GZB OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/PER_ARTRA PER_ARTRA]
-
<ref group="xtra">PMID:008557120</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Eukaryota]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Peroxidase]]
+
Check<jmol>
-
[[Category: Amada, F.]]
+
<jmolCheckbox>
-
[[Category: Fukuyama, K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/1gzb_consurf.spt"</scriptWhenChecked>
-
[[Category: Kunishima, N.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Glycoprotein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Heme]]
+
</jmolCheckbox>
-
[[Category: Oxidoreductase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gzb ConSurf].
-
[[Category: Peroxidase]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Agaricales sp. 'Arthromyces ramosus']]
 +
[[Category: Large Structures]]
 +
[[Category: Amada F]]
 +
[[Category: Fukuyama K]]
 +
[[Category: Kunishima N]]

Current revision

PEROXIDASE

PDB ID 1gzb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools