This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1h21

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:27, 27 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1h21.png|left|200px]]
 
-
{{STRUCTURE_1h21| PDB=1h21 | SCENE= }}
+
==A novel iron centre in the split-Soret cytochrome c from Desulfovibrio desulfuricans ATCC 27774==
-
 
+
<StructureSection load='1h21' size='340' side='right'caption='[[1h21]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===A NOVEL IRON CENTRE IN THE SPLIT-SORET CYTOCHROME C FROM DESULFOVIBRIO DESULFURICANS ATCC 27774===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1h21]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ddc 1ddc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H21 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H21 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12589573}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h21 OCA], [https://pdbe.org/1h21 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h21 RCSB], [https://www.ebi.ac.uk/pdbsum/1h21 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h21 ProSAT]</span></td></tr>
-
[[1h21]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ddc 1ddc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H21 OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYCX_DESDA CYCX_DESDA] Diheme cytochrome c which may be involved in sulfate reduction.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h2/1h21_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h21 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:012589573</ref><ref group="xtra">PMID:012370410</ref><references group="xtra"/>
+
[[Category: Desulfovibrio desulfuricans]]
[[Category: Desulfovibrio desulfuricans]]
-
[[Category: Abreu, I A.]]
+
[[Category: Large Structures]]
-
[[Category: Carrondo, M A.]]
+
[[Category: Abreu IA]]
-
[[Category: Coelho, A V.]]
+
[[Category: Carrondo MA]]
-
[[Category: Legall, J.]]
+
[[Category: Coelho AV]]
-
[[Category: Lourenco, A I.]]
+
[[Category: Legall J]]
-
[[Category: Matias, P M.]]
+
[[Category: Lourenco AI]]
-
[[Category: Pinto, D M.]]
+
[[Category: Matias PM]]
-
[[Category: Saraiva, L M.]]
+
[[Category: Pinto DM]]
-
[[Category: Teixeira, M.]]
+
[[Category: Saraiva LM]]
-
[[Category: Xavier, A V.]]
+
[[Category: Teixeira M]]
-
[[Category: Cytochrome]]
+
[[Category: Xavier AV]]
-
[[Category: Dimeric di-heme cytochrome]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Novel fold]]
+
-
[[Category: Novel iron-sulfur centre]]
+
-
[[Category: Stacked heme arrangement]]
+
-
[[Category: Sulfate respiration]]
+

Current revision

A novel iron centre in the split-Soret cytochrome c from Desulfovibrio desulfuricans ATCC 27774

PDB ID 1h21

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1h21"
Personal tools