This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1h29

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:27, 27 March 2024) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1h29.jpg|left|200px]]<br /><applet load="1h29" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1h29, resolution 2.51&Aring;" />
 
-
'''SULFATE RESPIRATION IN DESULFOVIBRIO VULGARIS HILDENBOROUGH: STRUCTURE OF THE 16-HEME CYTOCHROME C HMCA AT 2.5 A RESOLUTION AND A VIEW OF ITS ROLE IN TRANSMEMBRANE ELECTRON TRANSFER'''<br />
 
-
==About this Structure==
+
==Sulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme Cytochrome c HmcA at 2.5 A resolution and a view of its role in transmembrane electron transfer==
-
1H29 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with HEC as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=AC1:Hec Binding Site For Chain D'>AC1</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1H29 OCA].
+
<StructureSection load='1h29' size='340' side='right'caption='[[1h29]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
-
[[Category: Desulfovibrio vulgaris]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1h29]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H29 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H29 FirstGlance]. <br>
-
[[Category: Carrondo, M.A.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.51&#8491;</td></tr>
-
[[Category: Coelho, A.V.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
[[Category: Legall, J.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h29 OCA], [https://pdbe.org/1h29 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h29 RCSB], [https://www.ebi.ac.uk/pdbsum/1h29 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h29 ProSAT]</span></td></tr>
-
[[Category: Matias, P.M.]]
+
</table>
-
[[Category: Pereira, I.A.C.]]
+
== Function ==
-
[[Category: Placido, D.]]
+
[https://www.uniprot.org/uniprot/HMWC_DESVH HMWC_DESVH] HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates.
-
[[Category: Valente, F.M.A.]]
+
== Evolutionary Conservation ==
-
[[Category: Xavier, A.V.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: HEC]]
+
Check<jmol>
-
[[Category: c3-like domain]]
+
<jmolCheckbox>
-
[[Category: electron transport]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h2/1h29_consurf.spt"</scriptWhenChecked>
-
[[Category: energy conservation]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: high molecular mass cytochrome]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: hydrogen cycle]]
+
</jmolCheckbox>
-
[[Category: proton gradient]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h29 ConSurf].
-
[[Category: sulfate respiration]]
+
<div style="clear:both"></div>
-
[[Category: tetra-heme]]
+
-
[[Category: transmembrane redox complex]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 15:53:23 2007''
+
==See Also==
 +
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
 +
[[Category: Large Structures]]
 +
[[Category: Carrondo MA]]
 +
[[Category: Coelho AV]]
 +
[[Category: Legall J]]
 +
[[Category: Matias PM]]
 +
[[Category: Pereira IAC]]
 +
[[Category: Placido D]]
 +
[[Category: Valente FMA]]
 +
[[Category: Xavier AV]]

Current revision

Sulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme Cytochrome c HmcA at 2.5 A resolution and a view of its role in transmembrane electron transfer

PDB ID 1h29

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools