This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Virus coat proteins 3D structures
From Proteopedia
(Difference between revisions)
| (45 intermediate revisions not shown.) | |||
| Line 3: | Line 3: | ||
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Virus coat protein]] | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Virus coat protein]] | ||
{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| + | |||
| + | *Virus coat protein of adenovirus | ||
| + | |||
| + | **[[1p2z]] – havVCP 2 hexon - human adenovirus<br /> | ||
| + | **[[1x9p]] - havVCP 2 penton <br /> | ||
| + | **[[2c9g]] - havVCP 2 penton - Cryo EM<br /> | ||
| + | **[[2c9f]] - havVCP 2 penton + fiber - Cryo EM<br /> | ||
| + | **[[1x9t]] - havVCP 2 penton + fiber <br /> | ||
| + | **[[6cgv]] – havVCP 5 <br /> | ||
| + | **[[6b1t]] - havVCP 5 - Cryo EM<br /> | ||
| + | **[[1p30]], [[3tg7]] - havVCP 5 hexon<br /> | ||
| + | **[[3izo]] - havVCP 5 penton + fiber - Cryo EM<br /> | ||
| + | **[[5ldn]] - havVCP 5 hexon + antibody <br /> | ||
| + | **[[5ogi]] - havVCP 5 hexon + scFv <br /> | ||
| + | **[[6eqc]] - havVCP 5 hexon + scFv - Cryo EM<br /> | ||
| + | **[[4v4u]] - havVCP 5 hexon+penton - Cryo EM<br /> | ||
| + | **[[5tx1]] - havVCP 26 - Cryo EM<br /> | ||
| + | **[[6z7q]] - havVCP 41 penton - Cryo EM<br /> | ||
| + | **[[4aqq]] - havVCP B3 penton<br /> | ||
| + | **[[6hcr]] - havVCP B3 penton - Cryo EM<br /> | ||
| + | **[[4ar2]] - havVCP B3 penton + fiber<br /> | ||
| + | **[[2obe]] – savVCP 25 hexon - simian adenovirus<br /> | ||
| + | **[[3zif]] – bavVCP 3 hexon+penton+PIX+PVIII - bovine adenovirus - Cryo EM<br /> | ||
| + | **[[2iny]] – cavVCP 1 hexon - chicken adenovirus<br /> | ||
| + | **[[6qi5]] – lavVCP 2 hexon+penton+PIIIa+LH3 - lizard adenovirus - Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of adeno-associated virus | ||
| + | |||
| + | **[[3j4p]], [[3ng9]], [[5uf6]], [[6jcr]], [[6nxe]], [[6o9r]], [[6u3q]], [[6u95]], [[6v1g]], [[6v1t]], [[6v1z]], [[7kfr]] - aavVCP-1 - Adeno-associated virus - Cryo EM<br /> | ||
| + | **[[4iov]] – aavVCP-1 Vp1 <br /> | ||
| + | **[[6jcq]] - aavVCP-1 + dyslexia-associated protein - Cryo EM<br /> | ||
| + | **[[5ipi]], [[5ipk]], [[6e9d]], [[6ih9]] – aavVCP-2 Vp1<br /> | ||
| + | **[[3j1s]] - aavVCP-2 Vp1 + antibody - Cryo EM<br /> | ||
| + | **[[6cbe]], [[6ih9]], [[6u0r]], [[6u0v]] - aavVCP-2 Vp1 - Cryo EM<br /> | ||
| + | **[[6ihb]], [[6nz0]] - aavVCP-2 Vp1 + dyslexia-associated protein - Cryo EM<br /> | ||
| + | **[[1lp3]] – aavVCP <br /> | ||
| + | **[[2g8g]] – aavVCP-4 <br /> | ||
| + | **[[3ntt]] – aavVCP-5 <br /> | ||
| + | **[[6jct]], [[7kp3]] - aavVCP-5 - Cryo EM<br /> | ||
| + | **[[6jcs]], [[7kpn]] - aavVCP-5 Vp1 + dyslexia-associated protein - Cryo EM<br /> | ||
| + | **[[3oah]], [[3shm]], [[4v86]] – aavVCP-6 Vp1<br /> | ||
| + | **[[7jot]] - aavVCP-7 Vp3 - Cryo EM<br /> | ||
| + | **[[2qa0]], [[3ra2]], [[3ra4]], [[3ra8]], [[3ra9]], [[3raa]] – aavVCP-8 <br /> | ||
| + | **[[6pwa]], [[6u20]], [[6u2v]], [[6ubm]], [[6v10]], [[6v12]] - aavVCP-8 - Cryo EM<br /> | ||
| + | **[[3ux1]] – aavVCP-9 <br /> | ||
| + | **[[3kic]], [[3kie]] – aavVCP-38 <br /> | ||
| + | **[[6wfu]], [[6wft]] - baavVCP-1 - bat Adeno-associated virus - Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of bluetongue virus | ||
| + | |||
| + | **[[3j9d]] – btvVCP VP2 – bluetongue virus - Cryo EM<BR /> | ||
| + | **[[3iyk]] – btvVCP VP2+VP5 - Cryo EM<br /> | ||
| + | **[[6pns]], [[6po2]] – btvVCP VP3 + RNA polymerase – Cryo EM<BR /> | ||
| + | **[[2btv]] – btvVCP VP3+VP7 <BR /> | ||
| + | **[[2jh8]], [[2jh9]], [[2jha]], [[2jhc]], [[2jhp]] – btvVCP VP4<BR /> | ||
| + | **[[3j9e]] – btvVCP VP5 - Cryo EM<br /> | ||
| + | **[[1bvp]] – btvVCP VP7<br /> | ||
| + | |||
| + | *Virus coat protein of bombyx mori cypovirus | ||
| + | |||
| + | **[[5h0s]] – bmcvVCP Vp1 – bombyx mori cypovirus – Cryo EM<BR /> | ||
| + | **[[3j6q]] – bmcvVCP Vp3 + SAH – Cryo EM<BR /> | ||
| + | **[[3cnf]] – bmcvVCP Vp1+Vp3 – Cryo EM<BR /> | ||
| + | **[[3iz3]], [[3izx]], [[3j17]], [[3jaz]] – bmcvVCP Vp1+Vp3+Vp5 – Cryo EM<BR /> | ||
| + | **[[3jb0]] – bmcvVCP Vp1+Vp3+Vp5 + GTP – Cryo EM<BR /> | ||
| + | **[[3jb1]] – bmcvVCP Vp1+Vp3+Vp5 + SAM – Cryo EM<BR /> | ||
| + | **[[3jb2]] – bmcvVCP Vp1+Vp3+Vp5 + GTP + SAM – Cryo EM<BR /> | ||
| + | **[[3jay]], [[3jb3]] – bmcvVCP Vp1+Vp3+Vp5 + GTP + SAM + ATP – Cryo EM<BR /> | ||
| + | **[[6ty8]], [[6tz0]] – bmcvVCP Vp4 + RNA polymerase – Cryo EM<BR /> | ||
| + | **[[3jb6]] – bmcvVCP Vp1+Vp4 + RNA polymerase – Cryo EM<BR /> | ||
| + | **[[5h0r]] – bmcvVCP Vp4 + RNA polymerase + RNA – Cryo EM<BR /> | ||
| + | **[[3jb7]] – bmcvVCP Vp1+Vp4 + RNA polymerase + RNA + CTP + GTP – Cryo EM<BR /> | ||
| + | |||
| + | *Virus coat protein of chikungunya virus | ||
| + | |||
| + | **[[5h23]] – cgvVCP – chikungunya virus<br /> | ||
| + | **[[6nk5]] – cgvVCP + E1 + E2 – Cryo EM<br /> | ||
| + | **[[5vu2]], [[3j2w]] – cgvVCP + E1 + E2 + E3 – Cryo EM<br /> | ||
| + | **[[6nk6]] – cgvVCP + E1 + E2 + Mxra8 – Cryo EM<br /> | ||
| + | **[[6nk7]] – cgvVCP + E1 + E2 + E3 + Mxra8 – Cryo EM<br /> | ||
| + | **[[5any]], [[7cvy]], [[7cvz]], [[7cw0]], [[7cw2]], [[7cw3]] – cgvVCP + E1 + E2 + antibody – Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of coxsackievirus | ||
| + | |||
| + | **[[5yhq]] – csvVCP A6 Vp1+Vp3+Vp0 – coxsackievirus - Cryo EM<BR /> | ||
| + | **[[4bip]], [[4biq]] – csvVCP A7 Vp1+Vp2+Vp3 – Cryo EM<BR /> | ||
| + | **[[3j2j]] – csvVCP A9 Vp1+Vp2+Vp3 – Cryo EM<BR /> | ||
| + | **[[6acw]], [[6ad1]], [[6iio]] – csvVCP A10 Vp1+Vp3+Vp0 – Cryo EM<BR /> | ||
| + | **[[6acy]], [[6akt]], [[6aku]], [[6snb]], [[7c4t]], [[7c4w]], [[7c4y]], [[7c4z]] – csvVCP A10 Vp1+Vp2+Vp3 – Cryo EM<BR /> | ||
| + | **[[6acu]], [[6acz]], [[6aks]], [[6iij]], [[6smg]], [[7bzn]], [[7bzo]] – csvVCP A10 Vp1+Vp2+Vp3+Vp4 – Cryo EM<BR /> | ||
| + | **[[6snw]], [[7bzu]], [[7bzt]] – csvVCP A10 Vp1+Vp2+Vp3+Vp4 + kremen1 – Cryo EM<BR /> | ||
| + | **[[6ad0]] – csvVCP A10 Vp1+Vp2+Vp3+Vp4 + antibody – Cryo EM<BR /> | ||
| + | **[[5tsk]] – csvVCP A16 Vp1 – Cryo EM<BR /> | ||
| + | **[[6lht]] – csvVCP A16 Vp1 + antibody – Cryo EM<BR /> | ||
| + | **[[5tsl]] – csvVCP A16 Vp3 – Cryo EM<BR /> | ||
| + | **[[5c8c]], [[5c9a]] – csvVCP A16 Vp1+Vp3+Vp0 <BR /> | ||
| + | **[[4jgy]], [[4jgz]] – csvVCP A16 Vp1+Vp2+Vp3<BR /> | ||
| + | **[[6lhb]], [[6lhc]], [[6lhl]], [[6lho]], [[6lhp]], [[6lhq]] – csvVCP A16 Vp1+Vp2+Vp3 – Cryo EM<BR /> | ||
| + | **[[5c4w]] – csvVCP A16 Vp1+Vp2+Vp3+Vp4<BR /> | ||
| + | **[[5abj]], [[6lha]] – csvVCP A16 Vp1+Vp2+Vp3+Vp4 – Cryo EM<BR /> | ||
| + | **[[6lhk]] – csvVCP A16 Vp1+Vp2+Vp3+Vp4 + antibody – Cryo EM<BR /> | ||
| + | **[[1z7z]] – csvVCP A21 Vp1+Vp2+Vp3+Vp4 – Cryo EM<BR /> | ||
| + | **[[4q4v]], [[4q4w]], [[4q4x]], [[4q4y]] – csvVCP A24 Vp1+Vp2+Vp3+Vp4 <BR /> | ||
| + | **[[6eit]] – csvVCP A24 Vp1+Vp2+Vp3 + ICAM-1 – Cryo EM<BR /> | ||
| + | **[[7c9z]] – csvVCP B1 Vp1+Vp2+Vp3+Vp4 – Cryo EM<BR /> | ||
| + | **[[4gb3]] – csvVCP B3 Vp1+Vp2+Vp3+Vp4<BR /> | ||
| + | **[[3jd7]], [[6bzv]] – csvVCP B3 Vp1+Vp2+Vp3+Vp4 – Cryo EM<BR /> | ||
| + | **[[1jew]], [[1cov]] – csvVCP B3 Vp1+Vp2+Vp3+Vp4 + receptor – Cryo EM<BR /> | ||
| + | **[[7c9y]] – csvVCP B5 Vp1+Vp2+Vp3+Vp4 – Cryo EM<BR /> | ||
| + | |||
| + | *Virus coat protein of echovirus | ||
| + | |||
| + | **[[6o06]], [[6rjf]] – evVCP 1 – Echovirus - Cryo EM<BR /> | ||
| + | **[[1ev1]] – evVCP 1 <BR /> | ||
| + | **[[7c9x]] – evVCP 3 - Cryo EM<BR /> | ||
| + | **[[6ill]], [[6iln]], [[6ilo]], [[6ilp]] – evVCP 6 - Cryo EM<BR /> | ||
| + | **[[6ilj]], [[6ik]] – evVCP 6 + Cd55 - Cryo EM<BR /> | ||
| + | **[[6ilm]] – evVCP 6 + receptor - Cryo EM<BR /> | ||
| + | **[[2x5i]] – evVCP 7<BR /> | ||
| + | **[[1m11]] – evVCP 7 + Cd55 - Cryo EM<BR /> | ||
| + | **[[3iyp]] – evVCP 7 + Cd55 + polyprotein - Cryo EM<BR /> | ||
| + | **[[1h8t]] – evVCP 11 <BR /> | ||
| + | **[[6la3]], [[6la4]], [[6lap]], [[6lb1]], [[6lbo]], [[6lbq]] – evVCP 11 - Cryo EM<BR /> | ||
| + | **[[1upn]], [[2c8i]], [[6la5]], [[6lao]] – evVCP 11 + Cd55 - Cryo EM<BR /> | ||
| + | **[[6la6]], [[6la7]] – evVCP 1 + receptor - Cryo EM<BR /> | ||
| + | **[[6hbg]], [[6hbh]], [[6hbj]]. [[6hbk]], [[6hbl]], [[6hht]] – evVCP 18 - Cryo EM<BR /> | ||
| + | **[[4z92]], [[5mjv]] – evVCP 22 + RNA<BR /> | ||
| + | **[[4udf]] – evVCP 22 + antibody - Cryo EM<BR /> | ||
| + | **[[7c80]], [[7c81]], [[7c9s]], [[7c9t]], [[7c9u]] – evVCP 30 - Cryo EM<BR /> | ||
| + | **[[7c9v]] – evVCP 30 + receptor - Cryo EM<BR /> | ||
| + | **[[7cmk]] – evVCP 30 + antibody - Cryo EM<BR /> | ||
| + | **[[7c9w]] – evVCP 30 + Cd55 - Cryo EM<BR /> | ||
| + | |||
| + | *Virus coat protein of enterovirus | ||
| + | |||
| + | **[[3vbf]], [[3vbh]], [[3vbo]], [[3vbr]], [[3vbs]], [[3vbu]] – hevVCP – human enterovirus<br /> | ||
| + | **[[6diz]], [[6uh1]], [[6uh6]], [[6hu7]], [[6lqd]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 - Cryo EM<br /> | ||
| + | **[[3vbf]], [[3vbh]], [[3vbs]], [[4aed]], [[4n53]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 <br /> | ||
| + | **[[3vbr]], [[3vbu]], [[4gmp]], [[4rqp]], [[4rr3]], [[4rs5]], [[4yvs]], [[4yvw]] – hevVCP A71 Vp1+Vp3+Vp0 <br /> | ||
| + | **[[3j22]], [[3j23]], [[3j91]] – hevVCP A71 Vp1+Vp3+Vp0 - Cryo EM<br /> | ||
| + | **[[4c0u]], [[4c0y]], [[4c10]], [[5zud]], [[5zuf]], [[6z3p]], [[6z3q]] – hevVCP A71 Vp1+Vp2+Vp3 + antibody - Cryo EM<br /> | ||
| + | **[[3zfe]], [[3zff]], [[3zfg]], [[4cdq]], [[4cdu]], [[4cdw]], [[4cdx]], [[4cew]], [[4cey]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 + inhibitor<br /> | ||
| + | **[[6aj0]], [[6crp]], [[6crr]], [[6cs3]], [[6csg]], [[6cv1]], [[6cv2]], [[6cv5]], [[6cvb]], [[6mzi]] – hevVCP D68 Vp1+Vp2+Vp3+Vp4 - Cryo EM<br /> | ||
| + | **[[4wm8]], [[5bnn]], [[5bno]], [[5bnp]] – hevVCP D68 Vp1+Vp2+Vp3+Vp4<br /> | ||
| + | **[[4wm7]] – hevVCP D68 Vp1+Vp2+Vp3+Vp4 + drug<br /> | ||
| + | **[[6aj2]], [[6aj3]], [[6crs]], [[6cru]], [[6cs4]], [[6cs5]], [[6cs6]], [[6csa]], [[6csh]], [[6cv3]], [[6cv4]] – hevVCP D68 Vp1+Vp2+Vp3 - Cryo EM<br /> | ||
| + | **[[6aj7]], [[6aj9]], [[6wds]], [[6wdt]] – hevVCP D68 Vp1+Vp2+Vp3 + antibody - Cryo EM<br /> | ||
| + | **[[1bev]] – bevVCP Vp1+Vp2+Vp3+Vp4 - bovine enterovirus<br /> | ||
| + | **[[6thd]] – bevVCP – Cryo EM<br /> | ||
| + | **[[6thn]] – bevVCP + RNA – Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of foot and mouth disease virus | ||
| + | |||
| + | **[[1bbt]], [[1fod]], [[1fmd]], [[1qgc]], [[1zbe]], [[4gh4]], [[4iv1]], [[4iv3]], [[5d8a]] – fmdvVCP – foot and mouth disease virus<br /> | ||
| + | **[[5ac9]], [[5aca]], [[5ned]], [[5nej]] – fmdvVCP - Cryo EM<br /> | ||
| + | **[[1bfw]] – fmdvVCP Vp1 - NMR<br /> | ||
| + | **[[2wv4]], [[2wv5]] – fmdvVCP Vp1 + picornain<br /> | ||
| + | **[[5ddj]], [[5ne4]] – fmdvVCP + polyprotein<br /> | ||
| + | **[[1qgc]] – fmdvVCP + antibody - Cryo EM<br /> | ||
| + | **[[1zba]] – fmdvVCP + receptor<br /> | ||
| + | |||
| + | *Virus coat protein of hepatitis virus | ||
| + | |||
| + | **[[1qgt]], [[2qij]] – hbvVCP – hepatitis B virus<br /> | ||
| + | **[[3kxs]] – hbvVCP (mutant) <br /> | ||
| + | **[[2ztn]], [[3ggq]], [[2zzq]], [[3rkc]] - hevVCP – hepatitis E virus<br /> | ||
| + | **[[3rkd]] – hevVCP + antibody<br /> | ||
| + | **[[3iyo]] – hevVCP – Cryo EM<BR /> | ||
| + | |||
| + | *Virus coat protein of HIV; Domains - Dimerization 146-231; N-terminal 133-278; C-terminal 133-363 | ||
| + | |||
| + | **[[1aum]], [[1a8o]], [[1a43]], [[1baj]], [[2gon]], [[2ont]], [[2x82]], [[3h47]], [[3lry]], [[3mge]], [[3nte]], [[3p05]], [[3p0a]], [[4ipy]], [[4nx4]], [[4xfx]], [[4xfy]], [[4xfz]], [[5hgn]], [[6ec2]] – HivVCP-1 p24 C terminal<br /> | ||
| + | **[[3dik]], [[3j34]], [[3j3q]], [[3j3y]], [[3j4f]], [[4usn]], [[5l93]], [[5mcx]], [[5mcy]], [[5mcz]], [[5md0]], [[5md1]], [[5md3]], [[5md4]], [[5md5]], [[5md6]], [[5md7]], [[5md8]], [[5mda]], [[5mdb]], [[5mdc]], [[5mdd]], [[5mdf]], [[5mdg]], [[5up4]], [[5upw]], [[6skk]], [[6skn]], [[6smu]], [[6vws]], [[6x63]] – HivVCP-1 p24 - Cryo EM<br /> | ||
| + | **[[6skm]], [[6slq]], [[6slu]] – HivVCP-1 p24 (mutant) - Cryo EM<br /> | ||
| + | **[[5md2]], [[5md9]], [[5mde]] – HivVCP-1 p24 C-terminal+N-terminal- Cryo EM<br /> | ||
| + | **[[2jo0]], [[2kod]], [[2m8l]], [[2m8n]], [[2m8p]] - HivVCP-1 C terminal – NMR<BR /> | ||
| + | **[[2jyl]], [[2jyg]], [[2lf4]], [[6wap]] - HivVCP-1 C terminal (mutant) – NMR<BR /> | ||
| + | **[[3dph]], [[3ds2]], [[3ds5]], [[3dtj]], [[3gv2]], [[3h47]], [[3h4e]], [[4coc]], [[4cop]], [[4m0i]], [[4x4o]], [[4x4q]], [[5egl]], [[5hgo]], [[5jpa]], [[5w4o]], [[5w4p]], [[5w4q]], [[6axr]], [[6axs]], [[6axt]], [[6axw]], [[6axx]], [[6axy]], [[6b2g]], [[6b2h]], [[6b2i]], [[6b2j]], [[6b2k]], [[6ecn]], [[6mqa]], [[6mqo]], [[6mqp]], [[6omt]] - HivVCP-1 C terminal (mutant) <br /> | ||
| + | **[[1a43]] - HivVCP-1 dimerization domain<br /> | ||
| + | **[[5irt]] - HivVCP-1 dimerization domain - NMR<br /> | ||
| + | **[[2jyg]], [[2jyl]] - HivVCP-1 dimerization domain (mutant) - NMR<br /> | ||
| + | **[[2wlv]], [[5hgk]] - HivVCP-1 N-terminal<br /> | ||
| + | **[[1gwp]], [[1l6n]] - HivVCP-1 N-terminal - NMR<br /> | ||
| + | **[[2x82]], [[2x83]] – HivVCP-2 N terminal – HIV-2 | ||
| + | |||
| + | *Virus coat protein of HIV complex | ||
| + | |||
| + | **[[6bhr]], [[6bhs]], [[6bht]], [[6es8]], [[6h09]], [[6r6q]], [[6r8c]] – HivVCP-1 C-terminal (mutant) + inositol phosphate<br /> | ||
| + | **[[4u0a]], [[4u0b]], [[4wym]], [[6ay9]] – HivVCP-1 C-terminal (mutant) + CPSF6<br /> | ||
| + | **[[5hgm]], [[6ern]] – HivVCP-1 C-terminal + ATP<br /> | ||
| + | **[[5hgp]], [[6erm]], [[6v2f]] – HivVCP-1 C-terminal + inhibitor<br /> | ||
| + | **[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]], [[4qnb]], [[4u0e]], [[4u0f]], [[6axv]], [[6vkv]] – HivVCP-1 p24 C-terminal (mutant) + inhibitor<br /> | ||
| + | **[[2jpr]], [[2l6e]], [[6rwg]] – HivVCP-1 p24 C-terminal (mutant) + inhibitor - NMR<br /> | ||
| + | **[[2buo]] - HivVCP-1 C terminal + inhibitor of capsid assembly<br /> | ||
| + | **[[4u0c]], [[4u0d]], [[5tsv]], [[5tsx]], [[6aya]] - HivVCP-1 C terminal + Nup153<br /> | ||
| + | **[[2xt1]], [[2xv6]], [[2xxm]], [[5o2u]] - HivVCP-1 C terminal + camelid VHH <br /> | ||
| + | **[[2xxm]] - HivVCP-1 C terminal + camelid VHH + ICA peptide<br /> | ||
| + | **[[1afv]], [[1e6j]], [[3vrl]] – HivVCP-1 C terminal + antibody<br /> | ||
| + | **[[2gol]] – HivVCP-1 p24 C terminal + p17<br /> | ||
| + | **[[2x83]] - HivVCP-1 C terminal + TRIMCyp<br /> | ||
| + | **[[5fjb]], [[6y9v]], [[6y9w]], [[6y9x]], [[6y9y]], [[6y9z]], [[6zdj]] - HivVCP-1 C-terminal + cyclophilin - Cryo EM<br /> | ||
| + | **[[2buo]] - HivVCP-1 278-343 + inhibitor of capsid assembly<br /> | ||
| + | **[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]] - HivVCP-1 C terminal (mutant) + inhibitor of capsid assembly<br /> | ||
| + | **[[1ak4]], [[1m9c]], [[1m9d]] - HivVCP-1 N-terminal + cyclophilin<br /> | ||
| + | **[[1m9e]], [[1m9f]], [[1m9x]], [[1m9y]] - HivVCP-1 N-terminal (mutant) + cyclophilin<br /> | ||
| + | **[[4lqw]] - HivVCP-1 N terminal + Nup358<br /> | ||
| + | **[[2x2d]] - HivVCP-1 N terminal + CypA<br /> | ||
| + | **[[2xde]], [[4inb]], [[4j93]] – HivVCP-1 N-terminal + inhibitor<br /> | ||
| + | |||
| + | *Virus coat protein of norovirus; Domains P 222-530 | ||
| + | |||
| + | **[[1ihm]], [[3by1]], [[3by2]], [[3d26]], [[2zl5]], [[2zl6]], [[2zl7]] – NvVCP – Norwalk virus<br /> | ||
| + | **[[6otf]], [[6ou9]], [[6ouc]], [[6out]], [[6ouu]], [[7kjp]] - NvVCP - Cryo EM<br /> | ||
| + | **[[3onu]], [[3ony]], [[2obr]], [[3lq6]], [[3lqe]], [[3onu]], [[3q6q]], [[3q6r]], [[3r6j]], [[3ry8]], [[3sjp]], [[4oos]], [[4oov]], [[4oox]], [[4opv]], [[4p12]], [[4rlz]], [[4rox]], [[4rpd]], [[5e6t]], [[5f4j]], [[5f4m]], [[5f4o]], [[5iyn]], [[5kon]], [[5rpb]], [[5ysx]], [[5zuq]], [[5zus]] – NvVCP P domain<br /> | ||
| + | **[[2mch]] – NvVCP P domain - NMR<br /> | ||
| + | **[[2obs]], [[2obt]], [[3pa1]], [[3pa2]], [[3q38]], [[3q39]], [[3q3a]], [[3q6q]], [[3q6r]], [[3asp]], [[3asq]], [[3asr]], [[3ass]], [[3ast]], [[3ony]], [[3pun]], [[3pvd]], [[3r6k]], [[3ry8]], [[3sej]], [[3sld]], [[3sln]], [[4op7]], [[4opo]], [[4ops]], [[4p1v]], [[4p25]], [[4p26]], [[4p2n]], [[4p3i]], [[4rm0]], [[4wze]], [[4wzk]], [[4wzl]], [[4wzt]], [[4x05]], [[4x06]], [[4x07]], [[4x0c]], [[4z4r]], [[4z4s]], [[4z4t]], [[4z4u]], [[4z4v]], [[4z4w]], [[4z4y]], [[4z4z]], [[5bsx]], [[5bsy]], [[5hza]], [[5hzb]], [[5lkg]], [[5iyp]], [[5iyq]], [[5iyr]], [[5iyw]], [[5j35]], [[5j3o]], [[5lfe]], [[5lkc]], [[5lkk]], [[5n7m]], [[5zv5]], [[5zv7]], [[5zv9]], [[5zvc]], [[6gvz]], [[6gw0]], [[6gw1]], [[6gw2]], [[6gw4]], [[6gy9]], [[6h9v]] - NvVCP P domain + antigen<br /> | ||
| + | **[[5kw9]], [[6ewb]], [[6n81]], [[6n8d]] - NvVCP P domain + antibody<br /> | ||
| + | **[[4x7c]], [[4x7d]], [[4x7e]], [[4x7f]], [[5o02]], [[5o03]], [[5o04]], [[5o05]], [[5omm]], [[5omn]], [[6h6y]], [[6h6z]], [[6h71]], [[6xw4]], [[6xw5]], [[6xw6]] - NvVCP P domain + nanobody<br /> | ||
| + | **[[6h70]], [[6h72]] - NvVCP P domain + nanobody + antigen<br /> | ||
| + | **[[6xw7]] - NvVCP P domain + antibody + antigen<br /> | ||
| + | **[[4quz]] – FNvVCP P domain - Feline norovirus<br /> | ||
| + | **[[4qv2]], [[4qvj]], [[4qva]] – FNvVCP P domain + antigen<br /> | ||
| + | **[[6p4j]], [[6p4k]], [[6p4l]], [[6crj]], [[6iuk]], [[6s6l]] – MNvVCP - Mouse norovirus - Cryo EM<br /> | ||
| + | **[[3lq6]], [[3lqe]] - MNvVCP P domain <br /> | ||
| + | **[[3v7a]] - MNvVCP P domain + antibody<br /> | ||
| + | **[[5or7]], [[6c6q]], [[6e48]] - MNvVCP P domain + receptor<br /> | ||
| + | **[[6e47]], [[6h6l]], [[6h6m]] - MNvVCP P domain + receptor + antigen<br /> | ||
| + | |||
| + | *Virus coat protein of papillomavirus | ||
| + | |||
| + | **[[1dzl]] – hppvVCP L1 (mutant) – Human papillomavirus<br /> | ||
| + | **[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]], [[5j6r]], [[5w1o]], [[5w1x]], [[5y9e]], [[6igc]], [[6igd]], [[6ige]], [[6igf]] - hppvVCP L1<br /> | ||
| + | **[[6l31]], [[3j6r]], [[3j7g]], [[5jb1]], [[5kep]], [[5keq]] - hppvVCP L1 - Cryo EM<br /> | ||
| + | **[[5y9c]], [[5y9f]] - hppvVCP L1 + antibody<br /> | ||
| + | **[[3j8v]], [[3j8w]], [[3j8z]], [[3jba]], [[6bsp]], [[6bt3]], [[7cn2]], [[7dnh]], [[7dnk]], [[7dnl]] - hppvVCP L1 + antibody - Cryo EM<br /> | ||
| + | **[[3iyj]] - bppvVCP L1 - bovine papillomavirus - Cryo EM<br /> | ||
*Virus coat protein of parvovirus | *Virus coat protein of parvovirus | ||
| Line 18: | Line 254: | ||
**[[3jcx]] - cpvVCP + antibody<br /> | **[[3jcx]] - cpvVCP + antibody<br /> | ||
**[[1c8e]], [[1c8f]], [[1c8g]], [[1fpv]], [[4qyk]] – fplvVCP - feline panleukopenia parvovirus<br /> | **[[1c8e]], [[1c8f]], [[1c8g]], [[1fpv]], [[4qyk]] – fplvVCP - feline panleukopenia parvovirus<br /> | ||
| + | **[[1c8d]], [[1c8h]] - VCP – canine panleukopenia parvovirus<br /> | ||
| - | *Virus coat protein of | + | *Virus coat protein of poliovirus |
| - | **[[ | + | **[[1asj]], [[1hxs]], [[1pov]], [[1pvc]] – pvVCP – poliovirus<br /> |
| - | **[[ | + | **[[1dgi]], [[1xyr]], [[5o5b]] – pvVCP – Cryo EM<br /> |
| - | **[[ | + | **[[1al2]], [[1ar6]], [[1ar7]], [[1ar8]], [[1ar9]] – pvVCP (mutant)<br /> |
| - | **[[ | + | **[[1po2]], [[1vba]], [[1vbb]], [[1vbc]], [[1vbd]], [[1vbe]], [[2plv]] – pvVCP + inhibitor <br /> |
| - | + | **[[1eah]], [[1piv]] – pvVCP + drug<br /> | |
| - | **[[ | + | **[[3jbc]], [[3jbd]], [[3jbe]], [[3jbf]], [[3jbg]], [[5ktz]], [[5ku0]], [[5ku2]], [[5kwl]] – pvVCP + nanobody – Cryo EM<br /> |
| - | **[[ | + | **[[3j3o]] – pvVCP + antibody – Cryo EM<br /> |
| - | + | **[[5o5p]] – pvVCP + genome polyprotein – Cryo EM<br /> | |
| - | + | **[[1nn8]], [[3j8f]], [[3j9f]] – pvVCP + receptor – Cryo EM<br /> | |
| - | **[[ | + | |
| - | **[[ | + | |
| - | *Virus coat protein of | + | *Virus coat protein of human polyomavirus |
| - | **[[ | + | **[[5fua]] – hpvVCP1 Vp1 – human polyomavirus - Cryo EM<br /> |
| - | **[[ | + | **[[4mj0]], [[4mj1]] – hpvVCP1 Vp1 <br /> |
| - | **[[ | + | **[[6esb]] – hpvVCP1 Vp1+Vp2 - Cryo EM<br /> |
| - | **[[ | + | **[[1cn3]] – hpvVCP1 Vp1+Vp2 fragment<br /> |
| - | **[[ | + | **[[6gg0]] – hpvVCP1 Vp1 + antibody - Cryo EM<br /> |
| + | **[[3xnd]], [[3xng]], [[4jcd]]], [[4jce]], [[4x0y]], [[4x0z]], [[4x10]], [[4x11]], [[4x12]], [[4x13]], [[4x14]], [[4x15]], [[4x16]], [[4x17]] – hpvVCP2 Vp1 <br /> | ||
| + | **[[4jcf]], [[4wdy]], [[4wdz]], [[4we0]] – hpvVCP2 Vp1 (mutant)<br /> | ||
| + | **[[3s7v]] – hpvVCP3 Vp1 <br /> | ||
| + | **[[4pcg]] – hpvVCP6 Vp1 <br /> | ||
| + | **[[4pch]] – hpvVCP7 Vp1 <br /> | ||
| + | **[[4poq]], [[4por]], [[4pos]], [[4pot]] – hpvVCP9 Vp1 <br /> | ||
| + | **[[2r5k]] – hpvVCP11 Vp1 <br /> | ||
| + | **[[6y5z]], [[6y60]] – hpvVCP12 Vp1 <br /> | ||
| + | **[[5kep]], [[5keq]] – hpvVCP16 L1 - Cryo EM<br /> | ||
| + | **[[1dzl]], [[2r5h]], [[5w1o]] – hpvVCP16 L1 <br /> | ||
| + | **[[2r5i]], [[5w1x]] – hpvVCP18 L1 <br /> | ||
| + | **[[6ige]] – hpvVCP33 L1 <br /> | ||
| + | **[[2r5j]] – hpvVCP35 Vp1 <br /> | ||
| + | **[[6igf]] – hpvVCP52 L1<br /> | ||
| + | **[[5y9e]], [[6igd]] – hpvVCP58 L1<br /> | ||
| + | **[[5y9c]] – hpvVCP58 L1 + antibody <br /> | ||
| + | **[[5y9f]] – hpvVCP59 L1 + antibody <br /> | ||
| + | **[[6y5x]], [[6y5y]] – VCP Vp1 – New Jersey polyomavirus<br /> | ||
| + | **[[4fmg]], [[4fmh]], [[4mfi]], [[4fmj]], [[6zlz]] – mcpvVCP Vp1 – Merkel cell polyomavirus<br /> | ||
| + | **[[6zml]] – mcpvVCP1 Vp1 - Cryo EM<br /> | ||
| + | **[[4mbx]], [[4mby]], [[4mbz]] – VCP Vp1 – B-lymphotropic polyomavirus<br /> | ||
| + | **[[4u5z]], [[4u60]], [[4u61]], [[4u62]], [[6hku]], [[6hkv]] – VCP Vp1 – trichodysplasia spinulosa-associated polyomavirus<br /> | ||
| + | |||
| + | *Virus coat protein of non-human polyomavirus | ||
| + | |||
| + | **[[1sid]], [[1sie]], [[1vpn]], [[1vps]], [[1cn3]], [[5cpu]], [[5cpw]], [[5cpx]], [[5cpy]], [[5cpz]], [[5cq0]] – mpvVCP Vp1 – mouse polyomavirus<br /> | ||
| + | **[[7k24]], [[7k25]] – mpvVCP1 Vp1 - Cryo EM<br /> | ||
| + | **[[7k22]], [[7k23]] – mpvVCP1 Vp1 + antibody - Cryo EM<br /> | ||
| + | **[[6y67]], [[6y6a]] – VCP Vp1 – finch polyomavirus<br /> | ||
| + | **[[6y65]], [[6y66]] – VCP Vp1 – goose hemorrhagic polyomavirus<br /> | ||
| + | **[[3s7v]] - pvVCP Vp1 – polyomavirus<br /> | ||
| + | **[[3s7x]] - pvVCP Vp1 (mutant) <br /> | ||
| + | **[[1sva]] – svVCP – simian virus 40 or macaca mulatta polyomavirus 1<br /> | ||
| + | **[[3bwq]], [[3bwr]] – svVCP Vp1<br /> | ||
| + | **[[6y9i]] – VCP Vp1 – chimpanzee polyomavirus<br /> | ||
| + | **[[6y61]], [[6y63]], [[6y64]] – VCP Vp1 – sheep polyomavirus<br /> | ||
| + | **[[3iys]] – VCP1 Vp1 – chicken polyomavirus - Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of reovirus | ||
| + | |||
| + | **[[6ztz]] – mrvVCP – mammalian reovirus - Cryo EM<br /> | ||
| + | **[[1kke]], [[3s6x]], [[3s6y]], [[3s6z]], [[4gu3]], [[4gu4]], [[4xc5]] – mrvVCP σ1<br /> | ||
| + | **[[2oj5]] – mrvVCP σ1 head domain<br /> | ||
| + | **[[2oj6]] – mrvVCP σ1 head domain (mutant)<br /> | ||
| + | **[[6jaj]], [[6gak]], [[6gao]], [[6gap]] – mrvVCP σ1 coiled-coil domain<br /> | ||
| + | **[[5mhr]], [[5mhs]] – mrvVCP σ1 + antibody<br /> | ||
| + | **[[3eoy]], [[4odb]] – mrvVCP σ1 + junctional adhesion molecule<br /> | ||
| + | **[[1fn9]] – mrvVCP σ3 <br /> | ||
| + | **[[1ej6]] – mrvVCP λ1 + λ2 + σ3 <br /> | ||
| + | **[[2cse]] – mrvVCP μ1 - Cryo EM <br /> | ||
| + | **[[1jmu]] – mrvVCP μ1 + σ3<br /> | ||
| + | **[[6zty]] – mrvVCP μ1 + σ3 - Cryo EM<br /> | ||
| + | **[[1muk]], [[1mwh]] – mrvVCP λ3 <br /> | ||
| + | **[[1n1h]], [[1n35]], [[1n38]] – mrvVCP λ3 + RNA<br /> | ||
| + | **[[1uon]] – mrvVCP λ3 + RNA - Cryo EM <br /> | ||
| + | **[[6xf8]] – mrvVCP λ1 + μ1 + λ1 + σ2 + σ3 + mRNA methyltransferase - Cryo EM <br /> | ||
| + | **[[2vak]] – arvVCP σA – avian reovirus<br /> | ||
| + | **[[2bsf]], [[2bt7]], [[2bt8]], [[2jjl]], [[2vrs]] – arvVCP σC <br /> | ||
| + | **[[3k1q]], [[5zvt]] – gcrvVCP – grass carp reovirus – Cryo EM<BR /> | ||
| + | **[[5zvs]], [6m99]] – gcrvVCP Vp2+Vp3+Vp5 – Cryo EM<BR /> | ||
| + | **[[3iyl]] – gcrvVCP Vp4+Vp1+Vp3+Vp6 – Cryo EM<BR /> | ||
*Virus coat protein of rotavirus | *Virus coat protein of rotavirus | ||
| Line 72: | Line 368: | ||
**[[3sis]], [[3sit]] - prVCP Vp8 + glycan<br /> | **[[3sis]], [[3sit]] - prVCP Vp8 + glycan<br /> | ||
| - | *Virus coat protein of | + | *Virus coat protein of Rous sarcoma virus |
| - | **[[ | + | **[[1d1d]] – RsvVCP – Rous sarcoma virus – NMR<BR /> |
| - | + | **[[1em9]], [[1p7n]] – RsvVCP N terminal<br /> | |
| - | + | **[[1eoq]], [[3g1g]], [[3g1i]], [[3g21]], [[2x8q]] - RsvVCP C terminal<br /> | |
| - | + | **[[3g0v]], [[3g26]], [[3g28]], [[3g29]] - RsvVCP C terminal (mutant) <br /> | |
| - | + | **[[3tir]] – RsvVCP P27 | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | **[[ | + | |
| - | **[[ | + | |
| - | **[[ | + | |
| - | + | ||
| - | **[[ | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
*Virus coat protein of sindbis virus | *Virus coat protein of sindbis virus | ||
| Line 113: | Line 390: | ||
**[[5z0v]] – zvVCP (mutant) <br /> | **[[5z0v]] – zvVCP (mutant) <br /> | ||
**[[6lnt]] – zvVCP + envelope protein + pre-membrane protein + antibody – Cryo EM<br /> | **[[6lnt]] – zvVCP + envelope protein + pre-membrane protein + antibody – Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of human rhinovirus | ||
| + | **[[1r1a]] – hrv1AVCP – human rhinovirus 1A<br /> | ||
| + | **[[2hwd]] – hrv1AVCP + antiviral agent<br /> | ||
| + | **[[1fpn]] – hrv2VCP – human rhinovirus 2<br /> | ||
| + | **[[1v9u]], [[3dpr]] – hrv2VCP + VLDL receptor module <br /> | ||
| + | **[[1rhi]] – hrv3VCP – human rhinovirus 3<br /> | ||
| + | **[[4rhv]] – hrv14VCP – human rhinovirus 14<br /> | ||
| + | **[[1rmu]], [[2rmu]] – hrv14VCP (mutant)<br /> | ||
| + | **[[1hri]], [[1hrv]], [[1na1]], [[1ncq]], [[1r08]], [[1r09]], [[2hwb]], [[2hwc]], [[2hwe]], [[2hwf]], [[2r04]], [[2r06]], [[2r07]], [[2rm2]], [[2rr1]], [[2rs1]], [[2rs3]], [[2rs5]] – hrv14VCP + antiviral agent<br /> | ||
| + | **[[1rvf]] – hrv14VCP + antibody <br /> | ||
| + | **[[1d3i]] – hrv14VCP + intercellular adhesion molecule<br /> | ||
| + | **[[1nd2]] – hrv16VCP – human rhinovirus 16<br /> | ||
| + | **[[1aym]], [[1ayn]] – hrv16VCP (mutant)<br /> | ||
| + | **[[1c8m]], [[1ncr]], [[1nd3]], [[1qju]], [[1qjx]], [[1qjy]] – hrv16VCP + antiviral agent<br /> | ||
| + | **[[1d3e]] – hrv16VCP + intercellular adhesion molecule<br /> | ||
*Virus coat protein of plant viruses | *Virus coat protein of plant viruses | ||
**[[1js9]], [[1yc6]] – bmvVCP – brome mosaic virus<br /> | **[[1js9]], [[1yc6]] – bmvVCP – brome mosaic virus<br /> | ||
| - | **[[3j7l]], [[3j7m]], [[3j7n]], [[6voc]] – bmvVCP – Cryo EM<br /> | + | **[[3j7l]], [[3j7m]], [[3j7n]], [[6voc]], [[7pe1]], [[7pe2]] – bmvVCP – Cryo EM<br /> |
| - | **[[1f15]] – | + | **[[1f15]], [[4llf]] – cumvVCP – cucumber mosaic virus<br /> |
| - | **[[5ow6]] – | + | **[[5ow6]] – cumvVCP – Cryo EM<br /> |
**[[6mrl]] – VCP – cucumber leaf spot virus - Cryo EM<br /> | **[[6mrl]] – VCP – cucumber leaf spot virus - Cryo EM<br /> | ||
| - | **[[1auy]], [[1w39]] – tumvVCP – turnip yellow mosaic virus<br /> | + | **[[1auy]], [[1w39]], [[2fz1]] – tumvVCP – turnip yellow mosaic virus<br /> |
| - | **[[6t34]] – tumvVCP – Cryo EM<BR /> | + | **[[6rtk]], [[6t34]] – tumvVCP – Cryo EM<BR /> |
**[[3zxa]] - tcvVCP – turnip crinkle virus<br /> | **[[3zxa]] - tcvVCP – turnip crinkle virus<br /> | ||
**[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR /> | **[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR /> | ||
| - | **[[5a79]] – VCP – barley stripe mosaic virus – | + | **[[5a79]], [[5a7a]] – VCP – barley stripe mosaic virus – Cryo EM<br /> |
**[[6scl]] – VCP – barley yellow dwarf virus – Cryo EM<br /> | **[[6scl]] – VCP – barley yellow dwarf virus – Cryo EM<br /> | ||
| - | **[[5a2t]] – VCP – bamboo mosaic virus – | + | **[[5a2t]] – VCP – bamboo mosaic virus – Cryo EM<br /> |
**[[1f2n]] - VCP – rice yellow mosaic virus<br /> | **[[1f2n]] - VCP – rice yellow mosaic virus<br /> | ||
**[[1uf2]] – VCP + proteins – rice dwarf virus<br /> | **[[1uf2]] – VCP + proteins – rice dwarf virus<br /> | ||
| - | **[[ | + | **[[7epp]] - VCP - alfalfa mosaic virus – Cryo EM<br /> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
**[[1a6c]] - VCP - tobacco ringspot virus<br /> | **[[1a6c]] - VCP - tobacco ringspot virus<br /> | ||
**[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br /> | **[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br /> | ||
| - | **[[ | + | **[[1e57]], [[1qjz]], [[2wws]] – pmvVCP – Physalis mottle virus<br /> |
| - | + | ||
**[[2izw]] - VCP – ryegrass mottle virus<br /> | **[[2izw]] - VCP – ryegrass mottle virus<br /> | ||
**[[1opo]] - VCP – carnation mottle virus<br /> | **[[1opo]] - VCP – carnation mottle virus<br /> | ||
| + | **[[1ng0]] - VCP – cocksfoot mottle virus<br /> | ||
**[[3jb8]] – VCP - maize chlorotic mottle virus<br /> | **[[3jb8]] – VCP - maize chlorotic mottle virus<br /> | ||
| - | **[[4v5t]], [[4v5w]] – VCP – grapevine fanleaf virus<br /> | + | **[[2y26]], [[4v5t]], [[4v5w]] – VCP – grapevine fanleaf virus<br /> |
| - | **[[1ny7]], [[1cwp]], [[2bfu]] – | + | **[[1ny7]], [[1cwp]], [[2bfu]], [[5mfo]] – cmvVCP – cowpea mosaic virus<br /> |
| - | **[[ | + | **[[5a33]], [[5ms1]], [[5msh]], [[6qoz]] - cmvVCP - Cryo EM <br /> |
| - | **[[ | + | **[[8bi4]], [[8c38]], [[8cpy]] - ccmvVCP – cowpea chlorotic mottle virus – Cryo EM<br /> |
| + | **[[1za7]] - ccmvVCP (mutant) <br /> | ||
**[[6qcc]] – VCP – broad bean stain virus – Cryo EM<br /> | **[[6qcc]] – VCP – broad bean stain virus – Cryo EM<br /> | ||
**[[2tbv]] – VCP – tomato bushy stunt virus<br /> | **[[2tbv]] – VCP – tomato bushy stunt virus<br /> | ||
| - | **[[ | + | **[[1smv]], [[1vak]], [[1vb2]], [[1vb4]], [[1x33]], [[1x35]], [[1x36]], [[2vq0]] – smvVCP – sesbania mosaic virus<br /> |
| - | **[[ | + | **[[2wlp]] - smvVCP (mutant)<BR /> |
| - | **[[1stm]], [[4v99]] – | + | **[[1stm]], [[4v99]], [[5cvz]], [[5cw0]] – spmvVCP - satellite panicum mosaic virus<br /> |
**[[4sbv]] – VCP – southern bean mosaic virus<br /> | **[[4sbv]] – VCP – southern bean mosaic virus<br /> | ||
**[[6mrm]] – VCP - red clover necrotic mosaic virus - Cryo EM<br /> | **[[6mrm]] – VCP - red clover necrotic mosaic virus - Cryo EM<br /> | ||
| + | **[[2zah]] – VCP – melon necrotic spot virus <br /> | ||
**[[6f2s]] – VCP - ageratum yellow vein virus - Cryo EM<br /> | **[[6f2s]] – VCP - ageratum yellow vein virus - Cryo EM<br /> | ||
**[[6ek5]] – VCP - African cassava mosaic virus - Cryo EM<br /> | **[[6ek5]] – VCP - African cassava mosaic virus - Cryo EM<br /> | ||
**[[1m1c]] – VCP – yeast L-A virus<br /> | **[[1m1c]] – VCP – yeast L-A virus<br /> | ||
| + | **[[7qwx]], [[7qwz]] – VCP – yeast L-BCL virus – Cryo EM<br /> | ||
| + | **[[3j3i]] – VCP – Penicillium chrysogenum virus – Cryo EM<BR /> | ||
**[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR /> | **[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR /> | ||
| - | **[[ | + | **[[6sco]] – plrvVCP – potato leaf roll virus – Cryo EM<BR /> |
| - | **[[ | + | **[[7rlm]] – plrvVCP <br /> |
| - | **[[6hxx]] – | + | **[[6hxx]], [[8opa]], [[8opb]], [[8opf]], [[8opg]], [[8oph]] – pvyVCP – potato virus Y – Cryo EM<BR /> |
| + | **[[8opd]], [[8opj]], [[8opq]] – pvyVCP (mutant) – Cryo EM<BR /> | ||
**[[5fn1]] – VCP – pepino mosaic virus – Cryo EM<br /> | **[[5fn1]] – VCP – pepino mosaic virus – Cryo EM<br /> | ||
| + | **[[4dox]] – VCP – papaya mosaic virus <br /> | ||
| + | **[[7ncr]] – VCP – pepper cryptic virus – Cryo EM<br /> | ||
| + | |||
| + | *Virus coat protein of plant virus complex with RNA | ||
| + | |||
| + | **[[2xpj]] - pmvVCP + RNA <BR /> | ||
| + | **[[5a32]] - cmvVCP + RNA <BR /> | ||
| + | **[[1cwp]] - ccmvVCP + RNA <BR /> | ||
| + | **[[1pgl]], [[1pgw]], [[1bmv]] – VCP + RNA – bean pod mottle virus<br /> | ||
| + | **[[1laj]] – VCP + RNA – tomato aspermy virus<br /> | ||
| + | **[[6r7g]] – pvxVCP + RNA – potato virus X - Cryo EM<br /> | ||
| + | **[[8opc]], [[8ope]] – pvyVCP + RNA – Cryo EM<br /> | ||
| + | **[[8opl]] – pvyVCP (mutant) + RNA – Cryo EM<br /> | ||
| + | **[[5odv]] – VCP + RNA – watermelon mosaic virus - Cryo EM<br /> | ||
| + | **[[7og6]] – VCP + RNA – Alternanthera mosaic virus - Cryo EM<br /> | ||
| + | **[[8ugq]] – VCP + DNA – maize streak virus - Cryo EM<br /> | ||
| + | **[[2fz2]] - tumvVCP + RNA <BR /> | ||
| + | |||
| + | *For coat protein of satellite tobacco necrosis virus see [[Tobacco Mosaic Virus]] | ||
| + | |||
| + | *Virus coat protein of equine encephalitis virus | ||
| + | |||
| + | **[[1ep5]], [[1ep6]] – VeevVCP C terminal – Venezuelan equine encephalitis virus<br /> | ||
| + | **[[6mx4]], [[6mx7]], [[6odf]], [[7ffe]], [[7ffq]] – VeevVCP – Cryo EM<br /> | ||
| + | **[[3j0c]], [[3j0g]] - VeevVCP C terminal + envelope glycoprotein – Cryo EM<BR /> | ||
| + | **[[7fff]] - VeevVCP + envelope glycoprotein + LDLR – Cryo EM<BR /> | ||
| + | **[[7ffn]] - VeevVCP + envelope glycoprotein + p130 + LDLR – Cryo EM<BR /> | ||
| + | **[[7sfu]] - VeevVCP + envelope glycoproteins – Cryo EM<BR /> | ||
| + | **[[7fsv]], [[7sfw]] - VeevVCP + envelope glycoproteins + antibody – Cryo EM<BR /> | ||
| + | **[[7ffl]], [[7ffo]] - VeevVCP + envelope glycoproteins + assembly protein – Cryo EM<BR /> | ||
| + | **[[3ve6]] – VeevVCP NLS + importin<br /> | ||
| + | **[[6mui]], [[6mw9]], [[6mwc]], [[6mwv]], [[6mwx]], [[8eeu]], [[8eev]] – VeevVCP + antibody – Cryo EM<br /> | ||
| + | **[[8dec]], [[8dee]] – WeevVCP + envelope glycoproteins – Western equine encephalitis virus - Cryo EM<br /> | ||
*Virus coat protein by fiber diffraction | *Virus coat protein by fiber diffraction | ||
| Line 167: | Line 493: | ||
**[[1cgm]] – VCP – cucumber green mottle virus<br /> | **[[1cgm]] – VCP – cucumber green mottle virus<br /> | ||
**[[1rmv]] - VCP + RNA – fibgrass mosaic virus<br /> | **[[1rmv]] - VCP + RNA – fibgrass mosaic virus<br /> | ||
| - | **[[ | + | **[[3pdm]] – VCP – hibiscus latent Singapore virus<br /> |
| - | **[[ | + | **[[1hgv]], [[1hgz]], [[1hh0]] – VCP – Thermus phage PH75<br /> |
| + | **[[2c0w]] – Fd1VCP – Enterobacteria phage fd<br /> | ||
| + | **[[2hi5]] – Fd1VCP – Cryo EM<br /> | ||
| + | **[[1ql1]] – prvVCP – Primolicivirus<br /> | ||
| + | **[[2klv]] – prvVCP – NMR<br /> | ||
*Virus coat protein of other viruses | *Virus coat protein of other viruses | ||
| Line 174: | Line 504: | ||
**[[1qrj]] – htlvVCP – Human T-cell lymphotrophic virus – NMR<BR /> | **[[1qrj]] – htlvVCP – Human T-cell lymphotrophic virus – NMR<BR /> | ||
**[[1g03]] - htlvVCP N terminal - NMR<BR /> | **[[1g03]] - htlvVCP N terminal - NMR<BR /> | ||
| - | **[[1dzl]] – hpvVCP L1 (mutant) – Human papillomavirus<br /> | ||
| - | **[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]] - hpvVCP L1<br /> | ||
| - | **[[1pov]] – VCP – poliovirus<br /> | ||
**[[1no7]] – VCP Vp5 – Human herpes simplex virus<br /> | **[[1no7]] – VCP Vp5 – Human herpes simplex virus<br /> | ||
| - | **[[6rjf]] – VCP – Echovirus 1 - Cryo EM<BR /> | ||
**[[2mev]], [[1mec]] – VCP – mengo virus<br /> | **[[2mev]], [[1mec]] – VCP – mengo virus<br /> | ||
| - | **[[1bvp]] – VCP – bluetongue virus VP7<br /> | ||
**[[1nov]] – VCP – Nodamura virus<br /> | **[[1nov]] – VCP – Nodamura virus<br /> | ||
| - | **[[ | + | **[[4zpy]] – mvVCP Vp1 (mutant) - minute virus <br /> |
| + | **[[1z14]] – mvVCP Vp2<br /> | ||
**[[2xgk]] – mvVCP Vp2 (mutant) <br /> | **[[2xgk]] – mvVCP Vp2 (mutant) <br /> | ||
| - | **[[ | + | **[[7z5d]] – mvVCP Vp2 – Cryo EM<br /> |
| - | **[[ | + | **[[7z5e]], [[7z5f]] – mvVCP Vp2 (mutant) – Cryo EM<br /> |
| - | + | **[[2kgf]] – mpmvVCP p27 N-terminal – Mason-Pfizer monkey virus - NMR<br /> | |
| - | + | **[[4ard]], [[4arg]] – mpmvVCP p27 – Cryo EM<BR /> | |
| - | + | ||
| - | + | ||
| - | **[[2kgf]] – mpmvVCP N-terminal – Mason-Pfizer monkey virus<br /> | + | |
| - | **[[4ard | + | |
| - | + | ||
| - | + | ||
| - | + | ||
**[[1vcp]], [[1vcq]] – sfvVCP – semliki forest virus<br /> | **[[1vcp]], [[1vcq]] – sfvVCP – semliki forest virus<br /> | ||
**[[1dyl]] – sfvVCP – Cryo EM<br /> | **[[1dyl]] – sfvVCP – Cryo EM<br /> | ||
| - | **[[2yew]] - VCP + envelope glycoprotein – Barmah forest virus - Cryo EM<BR /> | ||
**[[1dnv]] – VCP – Galleria mellonella densovirus<br /> | **[[1dnv]] – VCP – Galleria mellonella densovirus<br /> | ||
| - | **[[2eia]], [[1eia]] – VCP – equine infectious anemia | + | **[[2eia]], [[1eia]] – VCP p26 – equine infectious anemia virus<br /> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
**[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br /> | **[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br /> | ||
**[[2vf1]] – VCP – rabbit picobirnavirus<br /> | **[[2vf1]] – VCP – rabbit picobirnavirus<br /> | ||
| - | **[[4agj]], [[4agk]], [[4uon]] | + | **[[4agj]], [[4agk]], [[4uon]], [[5g4b]] – VCP – aura virus<br /> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
**[[2gh8]] – VCP – San Miguel sea lion virus<br /> | **[[2gh8]] – VCP – San Miguel sea lion virus<br /> | ||
| - | **[[5tiq]], [[5tip]] – PbcvVCP – | + | **[[5tiq]], [[5tip]] – PbcvVCP – Paramecium bursaria chlorella virus<br /> |
| - | **[[1m4x]] – PbcvVCP – Cryo EM<BR /> | + | **[[1m4x]], [[6ncl]] – PbcvVCP – Cryo EM<BR /> |
**[[1ohf]] – VCP – Nudaurelia capensis omega virus<br /> | **[[1ohf]] – VCP – Nudaurelia capensis omega virus<br /> | ||
**[[2p5p]] – VCP domain III – West Nile virus<br /> | **[[2p5p]] – VCP domain III – West Nile virus<br /> | ||
| - | **[[3cnf]] – VCP Vp1+Vp3 – polyhedrosis virus – Cryo EM<BR /> | ||
**[[2v4x]] – VCP N terminal – sheep retrovirus<br /> | **[[2v4x]] – VCP N terminal – sheep retrovirus<br /> | ||
| - | **[[3fbm]] – | + | **[[1wcd]], [[1wce]], [[2df7]], [[3fbm]], [[3ide]] – ibdvVCP Vp2 – infectious bursal disease virus<br /> |
| - | **[[ | + | **[[2r18]], [[2z7j]] – ibdvVCP Vp3<br /> |
| - | + | ||
**[[4rft]], [[4rfu]], [[4wiz]] - VCP – grouper nervous necrosis virus<br /> | **[[4rft]], [[4rfu]], [[4wiz]] - VCP – grouper nervous necrosis virus<br /> | ||
**[[6itb]], [[6itf]] – fhvVCP β - flock house virus - Cryo EM<br /> | **[[6itb]], [[6itf]] – fhvVCP β - flock house virus - Cryo EM<br /> | ||
| - | **[[ | + | **[[3nap]], [[lzo]] – VCP – triatoma virus<br /> |
| - | + | ||
| - | + | ||
**[[2xgu]], [[2xgv]] – relvVCP N terminal – rabbit endogenous lentivirus<br /> | **[[2xgu]], [[2xgv]] – relvVCP N terminal – rabbit endogenous lentivirus<br /> | ||
| - | **[[3zue]] – | + | **[[3j1p]], [[3zue]] – rhdvVCP Vp60 - rabbit hemorrhagic disease virus – Cryo EM<BR /> |
| - | **[[ | + | **[[4egt]], [[4ejr]], [[4x1w]], [[4x1x]], [[4x1z]] – rhdvVCP Vp60<BR /> |
| - | **[[3r0r]] – | + | **[[3r0r]], [[5zju]] – pcvVCP 2 – pig circovirus<br /> |
| - | **[[ | + | **[[3jci]], [[5zbo]], [[6e2r]], [[6e2x]], [[6e2z]], [[6e30]], [[6e32]], [[6e34]], [[6e39]], [[6lm3]] – pcvVCP 2 – Cryo EM<br /> |
| - | + | **[[6rpk]], [[6rpl]], [[6rpo]] – bcvVCP – bat circovirus - Cryo EM<br /> | |
| - | + | **[[1mqt]], [[1oop]] – VCP – swine vesicular disease virus<br /> | |
| - | **[[ | + | |
**[[3s6p]] – VCP – Helicoverpa armigera stunt virus<br /> | **[[3s6p]] – VCP – Helicoverpa armigera stunt virus<br /> | ||
| - | **[[3m8l]] – | + | **[[3m8l]] – FcvVCP – feline calicivirus<br /> |
| - | **[[ | + | **[[4pb6]] – FcvVCP Vp1 <br /> |
| - | **[[ | + | **[[6gsh]] – FcvVCP Vp1 – Cryo EM<br /> |
| + | **[[7bjp]] – VCP – calicivirus – Cryo EM<br /> | ||
**[[6ojn]] – VCP - singapore grouper iridovirus - Cryo EM<br /> | **[[6ojn]] – VCP - singapore grouper iridovirus - Cryo EM<br /> | ||
**[[6rj0]] – VCP – Atlantic cod nervous necrosis virus – Cryo EM<br /> | **[[6rj0]] – VCP – Atlantic cod nervous necrosis virus – Cryo EM<br /> | ||
| - | **[[ | + | **[[6rj0]] – osgnnvVCP – orange-spotted grouper nervous necrosis virus – Cryo EM<br /> |
| - | **[[4zor]] – | + | **[[4rft]], [[4rfu]], [[4wiz]] – osgnnvVCP <br /> |
| - | **[[6msf]], [[ | + | **[[3f2e]], [[3j9x]] – VCP – Sulfolobus islandicus rod-shaped virus <br /> |
| - | **[[5kip]] – | + | **[[8a5t]] – VCP – L-A virus - Cryo EM<br /> |
| - | **[[ | + | **[[6yfd]], [[6yff]], [[6yfg]] – VCP – Beihai levi-like virus <br /> |
| - | **[[ | + | **[[6yft]], [[6yfu]] – VCP – Wenzhou levi-like virus <br /> |
| - | **[[6tup]] – | + | **[[2bbd]] - stivVCP – Sulfolobus turreted icosahedral virus <BR /> |
| + | *Virus coat protein of other viruses’ complexes | ||
| + | **[[1mvm]], [[1z1c]] – mvVCP VP2 + DNA <br /> | ||
| + | **[[2bbv]] – VCP + RNA – black beetle virus<br /> | ||
| + | **[[2yew]] - VCP + envelope glycoprotein – Barmah forest virus - Cryo EM<BR /> | ||
| + | **[[1f8v]] – VCP + RNA – pariacoto virus<br /> | ||
| + | **[[2qqp]] – VCP + RNA – Providence virus<br /> | ||
| + | **[[4fsj]], [[4ftb]] - fhvVCP β+γ + RNA<br /> | ||
| + | **[[3lob]] – fhvVCP (mutant) + RNA<br /> | ||
| + | **[[4fte]], [[4fts]] – fhvVCP α (mutant) + RNA<br /> | ||
| + | **[[2xgy]] – relvVCP N terminal + cyclophilin<br /> | ||
| + | **[[6ola]] – pcvVCP 2 + DNA – Cryo EM<br /> | ||
| + | **[[6l62]] – pcvVCP 2 + antibody – Cryo EM<br /> | ||
| + | **[[6gsi]] – FcvVCP Vp1+Vp2 + junctional adhesion molecule – Cryo EM<br /> | ||
| + | **[[7wco]] - VCP + envelope glycoproteins – Cryo EM<BR /> | ||
| + | **[[3j31]] - stivVCP + A223 penton base + A55 membrane protein + C381 turret protein – Sulfolobus turreted icosahedral virus – Cryo EM<BR /> | ||
| + | |||
| + | *Phage coat protein | ||
| + | |||
| + | **[[1cjd]], [[1hqn]], [[1hx6]] – PCP – Enterobacteria phage PRD1<br /> | ||
| + | **[[1fdm]], [[3knq]] – Fd1PCP <br /> | ||
| + | **[[8ch5]] – Fd1PCP – Cryo EM<br /> | ||
| + | **[[1nh4]] – Fd1PCP – NMR<br /> | ||
| + | **[[8b3o]], [[8b3p]], [[8b3q]] – PCP – Enterobacteria phage f1 – Cryo EM<br /> | ||
| + | **[[1fr5]] – PCP – Enterobacteria phage fr <br /> | ||
| + | **[[1una]] – PCP – Enterobacteria phage ga <br /> | ||
| + | **[[2xyy]], [[3iyh]] – PCP – Enterobacteria phage p22 – Cryo EM<br /> | ||
| + | **[[8ixj]], [[8ixk]], [[8ixl]], [[8jwt]], [[8jww]], [[8jwx]] – M13PCP – Bacteriophage M13 – Cryo EM<br /> | ||
| + | **[[2cpb]], [[2cps]], [[2mjz]] – M13PCP – NMR<br /> | ||
| + | **[[6yf9]], [[6yfa]], [[6yfb]], [[6yfc]], [[6yfe]], [[6yfh]], [[6yfl]], [[6yfj]], [[6yfk]], [[6yfm]], [[6yfn]], [[6yfo]], [[6yfp]], [[6yfq]], [[6yfr]], [[6yfs]] – PCP – Leviviridae<br /> | ||
| + | **[[1msc]], [[1zdk]], [[2ms2]], [[2wbh]] – MS2PCP – ''Escherichia'' phage MS2<br /> | ||
| + | **[[4bp7]], [[6rrs]], [[6rrt]] – MS2PCP – Cryo EM<br /> | ||
| + | **[[4zor]] – MS2PCP (mutant) <br /> | ||
| + | **[[1aq3]], [[1u1y]], [[1zdh]], [[1zdi]], [[1zdj]], [[2bu1]], [[2c4q]], [[2c4z]], [[2c50]], [[2c51]], [[2iz8]], [[2iz9]], [[2izn]], [[2vtu]], [[6msf]] – MS2PCP + RNA <br /> | ||
| + | **[[1aq4]], [[1zse]], [[2b2d]], [[2b2e]], [[2b2g]], [[2bny]], [[2bq5]], [[2bs0]], [[2bs1]] – MS2PCP (mutant) + RNA <br /> | ||
| + | **[[5tc1]] – MS2PCP + maturation protein + RNA – Cryo EM<br /> | ||
| + | **[[5kip]], [[5vly]], [[5vlz]], [[7lge]], [[7lgf]], [[7lgg]], [[7lgh]], [[7lhd]], [[8feh]] – bqbPCP - Bacteriophage Qbeta – Cryo EM<br /> | ||
| + | **[[4l8h]] – bqbPCP + RNA<br /> | ||
| + | **[[1zn5]] – pppf1VCP - NMR<br /> | ||
| + | **[[6a7f]] – PCP – Filamentous phage – Cryo EM<br /> | ||
| + | **[[1dwn]], [[1pfi]], [[1ql2]], [[2ifm]], [[2qud]], [[2vf9]] – pmpVCP – ''Pseudomonas'' phage <br /> | ||
| + | **[[6n4v]] – pmpVCP – Cryo EM<br /> | ||
| + | **[[8tux]] – pmpVCP + RNA – Cryo EM<br /> | ||
| + | **[[2qux]], [[4ang]] – pmpVCP + RNA <br /> | ||
| + | **[[4an5]] – PCP – Bacillus phage spp1 – Cryo EM<br /> | ||
| + | **[[2m5s]], [[6mpo]] – lvPCP I domain – Lederbergvirus – NMR<br /> | ||
| + | **[[2xyz]], [[3iyi]] – lvPCP – Cryo EM<br /> | ||
| + | **[[5jzr]] – acpVCP – ''Acinetobacter'' phage - NMR<br /> | ||
| + | **[[5fs4]] – acpVCP <br /> | ||
| + | **[[5lqp]], [[8toc]], [[8tw2]], [[8twc]] – acpVCP – Cryo EM<br /> | ||
| + | **[[1pjf]] – prvVCP – NMR<br /> | ||
| + | **[[6tuq]] – prvVCP – Cryo EM<br /> | ||
| + | **[[6tup]] – prvVCP + DNA – Cryo EM<br /> | ||
| + | **[[6yf7]] – VCP – Marine phage AC <br /> | ||
| + | **[[4eo0]] – VCP pilus binding domain – ''Salmonella'' phage IKe <br /> | ||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Current revision
3D structures of virus coat proteins
Updated on 01-April-2024 - For a general description of the protein see Virus coat protein
