This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Virus coat proteins 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:20, 1 April 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 141: Line 141:
**[[6diz]], [[6uh1]], [[6uh6]], [[6hu7]], [[6lqd]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 - Cryo EM<br />
**[[6diz]], [[6uh1]], [[6uh6]], [[6hu7]], [[6lqd]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 - Cryo EM<br />
**[[3vbf]], [[3vbh]], [[3vbs]], [[4aed]], [[4n53]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 <br />
**[[3vbf]], [[3vbh]], [[3vbs]], [[4aed]], [[4n53]] – hevVCP A71 Vp1+Vp2+Vp3+Vp4 <br />
-
**[[4rr3]], [[4rs5]], [[4yvw]] – hevVCP A71 Vp1+Vp3+Vp0 <br />
+
**[[3vbr]], [[3vbu]], [[4gmp]], [[4rqp]], [[4rr3]], [[4rs5]], [[4yvs]], [[4yvw]] – hevVCP A71 Vp1+Vp3+Vp0 <br />
-
**[[3vbr]], [[3vbu]], [[4gmp]], [[4rqp]], [[4yvs]], [[4yvw]] – hevVCP A71 Vp1+Vp3+Vp0 <br />
+
**[[3j22]], [[3j23]], [[3j91]] – hevVCP A71 Vp1+Vp3+Vp0 - Cryo EM<br />
**[[3j22]], [[3j23]], [[3j91]] – hevVCP A71 Vp1+Vp3+Vp0 - Cryo EM<br />
**[[4c0u]], [[4c0y]], [[4c10]], [[5zud]], [[5zuf]], [[6z3p]], [[6z3q]] – hevVCP A71 Vp1+Vp2+Vp3 + antibody - Cryo EM<br />
**[[4c0u]], [[4c0y]], [[4c10]], [[5zud]], [[5zuf]], [[6z3p]], [[6z3q]] – hevVCP A71 Vp1+Vp2+Vp3 + antibody - Cryo EM<br />
Line 152: Line 151:
**[[6aj7]], [[6aj9]], [[6wds]], [[6wdt]] – hevVCP D68 Vp1+Vp2+Vp3 + antibody - Cryo EM<br />
**[[6aj7]], [[6aj9]], [[6wds]], [[6wdt]] – hevVCP D68 Vp1+Vp2+Vp3 + antibody - Cryo EM<br />
**[[1bev]] – bevVCP Vp1+Vp2+Vp3+Vp4 - bovine enterovirus<br />
**[[1bev]] – bevVCP Vp1+Vp2+Vp3+Vp4 - bovine enterovirus<br />
 +
**[[6thd]] – bevVCP – Cryo EM<br />
 +
**[[6thn]] – bevVCP + RNA – Cryo EM<br />
*Virus coat protein of foot and mouth disease virus
*Virus coat protein of foot and mouth disease virus
Line 174: Line 175:
**[[1aum]], [[1a8o]], [[1a43]], [[1baj]], [[2gon]], [[2ont]], [[2x82]], [[3h47]], [[3lry]], [[3mge]], [[3nte]], [[3p05]], [[3p0a]], [[4ipy]], [[4nx4]], [[4xfx]], [[4xfy]], [[4xfz]], [[5hgn]], [[6ec2]] – HivVCP-1 p24 C terminal<br />
**[[1aum]], [[1a8o]], [[1a43]], [[1baj]], [[2gon]], [[2ont]], [[2x82]], [[3h47]], [[3lry]], [[3mge]], [[3nte]], [[3p05]], [[3p0a]], [[4ipy]], [[4nx4]], [[4xfx]], [[4xfy]], [[4xfz]], [[5hgn]], [[6ec2]] – HivVCP-1 p24 C terminal<br />
-
**[[3dik]], [[3j34]], [[3j3q]], [[3j3y]], [[3j4f]], [[4usn]], [[5l93]], [[5mcx]], [[5mcy]], [[5mcz]], [[5md0]], [[5md1]], [[5md3]], [[5md4]], [[5md5]], [[5md6]], [[5md7]], [[5md8]], [[5mda]], [[5mdb]], [[5mdc]], [[5mdd]], [[5mdf]], [[5mdg]], [[5up4]], [[5upw]], [[6skk]], [[6vws]], [[6x63]] – HivVCP-1 p24 - Cryo EM<br />
+
**[[3dik]], [[3j34]], [[3j3q]], [[3j3y]], [[3j4f]], [[4usn]], [[5l93]], [[5mcx]], [[5mcy]], [[5mcz]], [[5md0]], [[5md1]], [[5md3]], [[5md4]], [[5md5]], [[5md6]], [[5md7]], [[5md8]], [[5mda]], [[5mdb]], [[5mdc]], [[5mdd]], [[5mdf]], [[5mdg]], [[5up4]], [[5upw]], [[6skk]], [[6skn]], [[6smu]], [[6vws]], [[6x63]] – HivVCP-1 p24 - Cryo EM<br />
 +
**[[6skm]], [[6slq]], [[6slu]] – HivVCP-1 p24 (mutant) - Cryo EM<br />
**[[5md2]], [[5md9]], [[5mde]] – HivVCP-1 p24 C-terminal+N-terminal- Cryo EM<br />
**[[5md2]], [[5md9]], [[5mde]] – HivVCP-1 p24 C-terminal+N-terminal- Cryo EM<br />
**[[2jo0]], [[2kod]], [[2m8l]], [[2m8n]], [[2m8p]] - HivVCP-1 C terminal – NMR<BR />
**[[2jo0]], [[2kod]], [[2m8l]], [[2m8n]], [[2m8p]] - HivVCP-1 C terminal – NMR<BR />
Line 193: Line 195:
**[[5hgp]], [[6erm]], [[6v2f]] – HivVCP-1 C-terminal + inhibitor<br />
**[[5hgp]], [[6erm]], [[6v2f]] – HivVCP-1 C-terminal + inhibitor<br />
**[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]], [[4qnb]], [[4u0e]], [[4u0f]], [[6axv]], [[6vkv]] – HivVCP-1 p24 C-terminal (mutant) + inhibitor<br />
**[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]], [[4qnb]], [[4u0e]], [[4u0f]], [[6axv]], [[6vkv]] – HivVCP-1 p24 C-terminal (mutant) + inhibitor<br />
-
**[[2jpr]], [[2l6e]] – HivVCP-1 p24 C-terminal (mutant) + inhibitor - NMR<br />
+
**[[2jpr]], [[2l6e]], [[6rwg]] – HivVCP-1 p24 C-terminal (mutant) + inhibitor - NMR<br />
**[[2buo]] - HivVCP-1 C terminal + inhibitor of capsid assembly<br />
**[[2buo]] - HivVCP-1 C terminal + inhibitor of capsid assembly<br />
-
**[[4u0c]], [[4u0d]], [[6aya]] - HivVCP-1 C terminal + Nup153<br />
+
**[[4u0c]], [[4u0d]], [[5tsv]], [[5tsx]], [[6aya]] - HivVCP-1 C terminal + Nup153<br />
**[[2xt1]], [[2xv6]], [[2xxm]], [[5o2u]] - HivVCP-1 C terminal + camelid VHH <br />
**[[2xt1]], [[2xv6]], [[2xxm]], [[5o2u]] - HivVCP-1 C terminal + camelid VHH <br />
 +
**[[2xxm]] - HivVCP-1 C terminal + camelid VHH + ICA peptide<br />
**[[1afv]], [[1e6j]], [[3vrl]] – HivVCP-1 C terminal + antibody<br />
**[[1afv]], [[1e6j]], [[3vrl]] – HivVCP-1 C terminal + antibody<br />
**[[2gol]] – HivVCP-1 p24 C terminal + p17<br />
**[[2gol]] – HivVCP-1 p24 C terminal + p17<br />
**[[2x83]] - HivVCP-1 C terminal + TRIMCyp<br />
**[[2x83]] - HivVCP-1 C terminal + TRIMCyp<br />
-
**[[6y9v]], [[6y9w]], [[6y9x]], [[6y9y]], [[6y9z]], [[6zdj]] - HivVCP-1 C-terminal + cyclophilin - Cryo EM<br />
+
**[[5fjb]], [[6y9v]], [[6y9w]], [[6y9x]], [[6y9y]], [[6y9z]], [[6zdj]] - HivVCP-1 C-terminal + cyclophilin - Cryo EM<br />
**[[2buo]] - HivVCP-1 278-343 + inhibitor of capsid assembly<br />
**[[2buo]] - HivVCP-1 278-343 + inhibitor of capsid assembly<br />
**[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]] - HivVCP-1 C terminal (mutant) + inhibitor of capsid assembly<br />
**[[3ds0]], [[3ds1]], [[3ds3]], [[3ds4]] - HivVCP-1 C terminal (mutant) + inhibitor of capsid assembly<br />
Line 206: Line 209:
**[[1m9e]], [[1m9f]], [[1m9x]], [[1m9y]] - HivVCP-1 N-terminal (mutant) + cyclophilin<br />
**[[1m9e]], [[1m9f]], [[1m9x]], [[1m9y]] - HivVCP-1 N-terminal (mutant) + cyclophilin<br />
**[[4lqw]] - HivVCP-1 N terminal + Nup358<br />
**[[4lqw]] - HivVCP-1 N terminal + Nup358<br />
 +
**[[2x2d]] - HivVCP-1 N terminal + CypA<br />
**[[2xde]], [[4inb]], [[4j93]] – HivVCP-1 N-terminal + inhibitor<br />
**[[2xde]], [[4inb]], [[4j93]] – HivVCP-1 N-terminal + inhibitor<br />
-
*Virus coat protein of norovirus
+
*Virus coat protein of norovirus; Domains P 222-530
**[[1ihm]], [[3by1]], [[3by2]], [[3d26]], [[2zl5]], [[2zl6]], [[2zl7]] – NvVCP – Norwalk virus<br />
**[[1ihm]], [[3by1]], [[3by2]], [[3d26]], [[2zl5]], [[2zl6]], [[2zl7]] – NvVCP – Norwalk virus<br />
Line 229: Line 233:
*Virus coat protein of papillomavirus
*Virus coat protein of papillomavirus
-
**[[1dzl]] – hpvVCP L1 (mutant) – Human papillomavirus<br />
+
**[[1dzl]] – hppvVCP L1 (mutant) – Human papillomavirus<br />
-
**[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]], [[5j6r]], [[5w1o]], [[5w1x]], [[5y9e]], [[6igc]], [[6igd]], [[6ige]], [[6igf]] - hpvVCP L1<br />
+
**[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]], [[5j6r]], [[5w1o]], [[5w1x]], [[5y9e]], [[6igc]], [[6igd]], [[6ige]], [[6igf]] - hppvVCP L1<br />
-
**[[6l31]], [[3j6r]], [[3j7g]], [[5jb1]], [[5kep]], [[5keq]] - hpvVCP L1 - Cryo EM<br />
+
**[[6l31]], [[3j6r]], [[3j7g]], [[5jb1]], [[5kep]], [[5keq]] - hppvVCP L1 - Cryo EM<br />
-
**[[5y9c]], [[5y9f]] - hpvVCP L1 + antibody<br />
+
**[[5y9c]], [[5y9f]] - hppvVCP L1 + antibody<br />
-
**[[3j8v]], [[3j8w]], [[3j8z]], [[3jba]], [[6bsp]], [[6bt3]], [[7cn2]], [[7dnh]], [[7dnk]], [[7dnl]] - hpvVCP L1 + antibody - Cryo EM<br />
+
**[[3j8v]], [[3j8w]], [[3j8z]], [[3jba]], [[6bsp]], [[6bt3]], [[7cn2]], [[7dnh]], [[7dnk]], [[7dnl]] - hppvVCP L1 + antibody - Cryo EM<br />
-
**[[3iyj]] - bpvVCP L1 - bovine papillomavirus - Cryo EM<br />
+
**[[3iyj]] - bppvVCP L1 - bovine papillomavirus - Cryo EM<br />
*Virus coat protein of parvovirus
*Virus coat protein of parvovirus
Line 255: Line 259:
**[[1asj]], [[1hxs]], [[1pov]], [[1pvc]] – pvVCP – poliovirus<br />
**[[1asj]], [[1hxs]], [[1pov]], [[1pvc]] – pvVCP – poliovirus<br />
-
**[[1dgi]], [[5o5b]] – pvVCP – Cryo EM<br />
+
**[[1dgi]], [[1xyr]], [[5o5b]] – pvVCP – Cryo EM<br />
**[[1al2]], [[1ar6]], [[1ar7]], [[1ar8]], [[1ar9]] – pvVCP (mutant)<br />
**[[1al2]], [[1ar6]], [[1ar7]], [[1ar8]], [[1ar9]] – pvVCP (mutant)<br />
**[[1po2]], [[1vba]], [[1vbb]], [[1vbc]], [[1vbd]], [[1vbe]], [[2plv]] – pvVCP + inhibitor <br />
**[[1po2]], [[1vba]], [[1vbb]], [[1vbc]], [[1vbd]], [[1vbe]], [[2plv]] – pvVCP + inhibitor <br />
Line 386: Line 390:
**[[5z0v]] – zvVCP (mutant) <br />
**[[5z0v]] – zvVCP (mutant) <br />
**[[6lnt]] – zvVCP + envelope protein + pre-membrane protein + antibody – Cryo EM<br />
**[[6lnt]] – zvVCP + envelope protein + pre-membrane protein + antibody – Cryo EM<br />
 +
 +
*Virus coat protein of human rhinovirus
 +
**[[1r1a]] – hrv1AVCP – human rhinovirus 1A<br />
 +
**[[2hwd]] – hrv1AVCP + antiviral agent<br />
 +
**[[1fpn]] – hrv2VCP – human rhinovirus 2<br />
 +
**[[1v9u]], [[3dpr]] – hrv2VCP + VLDL receptor module <br />
 +
**[[1rhi]] – hrv3VCP – human rhinovirus 3<br />
 +
**[[4rhv]] – hrv14VCP – human rhinovirus 14<br />
 +
**[[1rmu]], [[2rmu]] – hrv14VCP (mutant)<br />
 +
**[[1hri]], [[1hrv]], [[1na1]], [[1ncq]], [[1r08]], [[1r09]], [[2hwb]], [[2hwc]], [[2hwe]], [[2hwf]], [[2r04]], [[2r06]], [[2r07]], [[2rm2]], [[2rr1]], [[2rs1]], [[2rs3]], [[2rs5]] – hrv14VCP + antiviral agent<br />
 +
**[[1rvf]] – hrv14VCP + antibody <br />
 +
**[[1d3i]] – hrv14VCP + intercellular adhesion molecule<br />
 +
**[[1nd2]] – hrv16VCP – human rhinovirus 16<br />
 +
**[[1aym]], [[1ayn]] – hrv16VCP (mutant)<br />
 +
**[[1c8m]], [[1ncr]], [[1nd3]], [[1qju]], [[1qjx]], [[1qjy]] – hrv16VCP + antiviral agent<br />
 +
**[[1d3e]] – hrv16VCP + intercellular adhesion molecule<br />
*Virus coat protein of plant viruses
*Virus coat protein of plant viruses
**[[1js9]], [[1yc6]] – bmvVCP – brome mosaic virus<br />
**[[1js9]], [[1yc6]] – bmvVCP – brome mosaic virus<br />
-
**[[3j7l]], [[3j7m]], [[3j7n]], [[6voc]] – bmvVCP – Cryo EM<br />
+
**[[3j7l]], [[3j7m]], [[3j7n]], [[6voc]], [[7pe1]], [[7pe2]] – bmvVCP – Cryo EM<br />
-
**[[1f15]] – cmvVCP – cucumber mosaic virus<br />
+
**[[1f15]], [[4llf]] – cumvVCP – cucumber mosaic virus<br />
-
**[[5ow6]] – cmvVCP – Cryo EM<br />
+
**[[5ow6]] – cumvVCP – Cryo EM<br />
**[[6mrl]] – VCP – cucumber leaf spot virus - Cryo EM<br />
**[[6mrl]] – VCP – cucumber leaf spot virus - Cryo EM<br />
-
**[[1auy]], [[1w39]] – tumvVCP – turnip yellow mosaic virus<br />
+
**[[1auy]], [[1w39]], [[2fz1]] – tumvVCP – turnip yellow mosaic virus<br />
-
**[[6t34]] – tumvVCP – Cryo EM<BR />
+
**[[6rtk]], [[6t34]] – tumvVCP – Cryo EM<BR />
**[[3zxa]] - tcvVCP – turnip crinkle virus<br />
**[[3zxa]] - tcvVCP – turnip crinkle virus<br />
**[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR />
**[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR />
Line 403: Line 423:
**[[1f2n]] - VCP – rice yellow mosaic virus<br />
**[[1f2n]] - VCP – rice yellow mosaic virus<br />
**[[1uf2]] – VCP + proteins – rice dwarf virus<br />
**[[1uf2]] – VCP + proteins – rice dwarf virus<br />
-
**[[1a34]], [[2tmv]], [[1ei7]], [[4oq8]], [[4oq9]], [[4nia]] – stmvVCP + RNA - satellite tobacco mosaic virus<br />
+
**[[7epp]] - VCP - alfalfa mosaic virus – Cryo EM<br />
-
**[[3j06]] - stmvVCP + RNA Cryo EM<BR />
+
-
**[[2om3]], [[2xea]], [[4udv]] – stmvVCP – Cryo EM<BR />
+
-
**[[3kml]] – stmvVCP (mutant) <br />
+
-
**[[2buk]], [[1vtm]], [[4v4m]] - stnvVCP - satellite tobacco necrosis virus<br />
+
-
**[[3s4g]] - stnvVCP + RNA <BR />
+
-
**[[6i5a]], [[6sae]], [[6sag]] – tmvVCP - tobacco mosaic virus - Cryo EM<br />
+
**[[1a6c]] - VCP - tobacco ringspot virus<br />
**[[1a6c]] - VCP - tobacco ringspot virus<br />
**[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br />
**[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br />
**[[1e57]], [[1qjz]], [[2wws]] – pmvVCP – Physalis mottle virus<br />
**[[1e57]], [[1qjz]], [[2wws]] – pmvVCP – Physalis mottle virus<br />
-
**[[2xpj]] - pmvVCP + RNA <BR />
 
**[[2izw]] - VCP – ryegrass mottle virus<br />
**[[2izw]] - VCP – ryegrass mottle virus<br />
**[[1opo]] - VCP – carnation mottle virus<br />
**[[1opo]] - VCP – carnation mottle virus<br />
 +
**[[1ng0]] - VCP – cocksfoot mottle virus<br />
**[[3jb8]] – VCP - maize chlorotic mottle virus<br />
**[[3jb8]] – VCP - maize chlorotic mottle virus<br />
**[[2y26]], [[4v5t]], [[4v5w]] – VCP – grapevine fanleaf virus<br />
**[[2y26]], [[4v5t]], [[4v5w]] – VCP – grapevine fanleaf virus<br />
**[[1ny7]], [[1cwp]], [[2bfu]], [[5mfo]] – cmvVCP – cowpea mosaic virus<br />
**[[1ny7]], [[1cwp]], [[2bfu]], [[5mfo]] – cmvVCP – cowpea mosaic virus<br />
-
**[[5ms1]], [[5msh]], [[6qoz]] - cmvVCP - Cryo EM <br />
+
**[[5a33]], [[5ms1]], [[5msh]], [[6qoz]] - cmvVCP - Cryo EM <br />
-
**[[1za7]] - ccmvVCP (mutant) – cowpea chlorotic mottle virus<br />
+
**[[8bi4]], [[8c38]], [[8cpy]] - ccmvVCP – cowpea chlorotic mottle virus – Cryo EM<br />
-
**[[1cwp]] - ccmvVCP + RNA <BR />
+
**[[1za7]] - ccmvVCP (mutant) <br />
-
**[[1pgl]], [[1pgw]], [[1bmv]] – VCP + RNA – bean pod mottle virus<br />
+
**[[6qcc]] – VCP – broad bean stain virus – Cryo EM<br />
**[[6qcc]] – VCP – broad bean stain virus – Cryo EM<br />
**[[2tbv]] – VCP – tomato bushy stunt virus<br />
**[[2tbv]] – VCP – tomato bushy stunt virus<br />
-
**[[1laj]] – VCP + RNA – tomato aspermy virus<br />
 
**[[1smv]], [[1vak]], [[1vb2]], [[1vb4]], [[1x33]], [[1x35]], [[1x36]], [[2vq0]] – smvVCP – sesbania mosaic virus<br />
**[[1smv]], [[1vak]], [[1vb2]], [[1vb4]], [[1x33]], [[1x35]], [[1x36]], [[2vq0]] – smvVCP – sesbania mosaic virus<br />
**[[2wlp]] - smvVCP (mutant)<BR />
**[[2wlp]] - smvVCP (mutant)<BR />
**[[1stm]], [[4v99]], [[5cvz]], [[5cw0]] – spmvVCP - satellite panicum mosaic virus<br />
**[[1stm]], [[4v99]], [[5cvz]], [[5cw0]] – spmvVCP - satellite panicum mosaic virus<br />
-
**[[4v99]] - spmvVCP + RNA <BR />
 
**[[4sbv]] – VCP – southern bean mosaic virus<br />
**[[4sbv]] – VCP – southern bean mosaic virus<br />
**[[6mrm]] – VCP - red clover necrotic mosaic virus - Cryo EM<br />
**[[6mrm]] – VCP - red clover necrotic mosaic virus - Cryo EM<br />
 +
**[[2zah]] – VCP – melon necrotic spot virus <br />
**[[6f2s]] – VCP - ageratum yellow vein virus - Cryo EM<br />
**[[6f2s]] – VCP - ageratum yellow vein virus - Cryo EM<br />
**[[6ek5]] – VCP - African cassava mosaic virus - Cryo EM<br />
**[[6ek5]] – VCP - African cassava mosaic virus - Cryo EM<br />
**[[1m1c]] – VCP – yeast L-A virus<br />
**[[1m1c]] – VCP – yeast L-A virus<br />
 +
**[[7qwx]], [[7qwz]] – VCP – yeast L-BCL virus – Cryo EM<br />
 +
**[[3j3i]] – VCP – Penicillium chrysogenum virus – Cryo EM<BR />
**[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR />
**[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR />
-
**[[6hxx]] – pvVCP – potato virus – Cryo EM<BR />
+
**[[6sco]] – plrvVCP – potato leaf roll virus – Cryo EM<BR />
-
**[[6r7g]] – pvVCP + RNA – Cryo EM<br />
+
**[[7rlm]] – plrvVCP <br />
-
**[[6sco]] – VCP – potato leaf roll virus – Cryo EM<BR />
+
**[[6hxx]], [[8opa]], [[8opb]], [[8opf]], [[8opg]], [[8oph]] – pvyVCP – potato virus Y – Cryo EM<BR />
 +
**[[8opd]], [[8opj]], [[8opq]] – pvyVCP (mutant) – Cryo EM<BR />
**[[5fn1]] – VCP – pepino mosaic virus – Cryo EM<br />
**[[5fn1]] – VCP – pepino mosaic virus – Cryo EM<br />
 +
**[[4dox]] – VCP – papaya mosaic virus <br />
 +
**[[7ncr]] – VCP – pepper cryptic virus – Cryo EM<br />
 +
 +
*Virus coat protein of plant virus complex with RNA
 +
 +
**[[2xpj]] - pmvVCP + RNA <BR />
 +
**[[5a32]] - cmvVCP + RNA <BR />
 +
**[[1cwp]] - ccmvVCP + RNA <BR />
 +
**[[1pgl]], [[1pgw]], [[1bmv]] – VCP + RNA – bean pod mottle virus<br />
 +
**[[1laj]] – VCP + RNA – tomato aspermy virus<br />
 +
**[[6r7g]] – pvxVCP + RNA – potato virus X - Cryo EM<br />
 +
**[[8opc]], [[8ope]] – pvyVCP + RNA – Cryo EM<br />
 +
**[[8opl]] – pvyVCP (mutant) + RNA – Cryo EM<br />
 +
**[[5odv]] – VCP + RNA – watermelon mosaic virus - Cryo EM<br />
 +
**[[7og6]] – VCP + RNA – Alternanthera mosaic virus - Cryo EM<br />
 +
**[[8ugq]] – VCP + DNA – maize streak virus - Cryo EM<br />
 +
**[[2fz2]] - tumvVCP + RNA <BR />
 +
 +
*For coat protein of satellite tobacco necrosis virus see [[Tobacco Mosaic Virus]]
 +
 +
*Virus coat protein of equine encephalitis virus
 +
 +
**[[1ep5]], [[1ep6]] – VeevVCP C terminal – Venezuelan equine encephalitis virus<br />
 +
**[[6mx4]], [[6mx7]], [[6odf]], [[7ffe]], [[7ffq]] – VeevVCP – Cryo EM<br />
 +
**[[3j0c]], [[3j0g]] - VeevVCP C terminal + envelope glycoprotein – Cryo EM<BR />
 +
**[[7fff]] - VeevVCP + envelope glycoprotein + LDLR – Cryo EM<BR />
 +
**[[7ffn]] - VeevVCP + envelope glycoprotein + p130 + LDLR – Cryo EM<BR />
 +
**[[7sfu]] - VeevVCP + envelope glycoproteins – Cryo EM<BR />
 +
**[[7fsv]], [[7sfw]] - VeevVCP + envelope glycoproteins + antibody – Cryo EM<BR />
 +
**[[7ffl]], [[7ffo]] - VeevVCP + envelope glycoproteins + assembly protein – Cryo EM<BR />
 +
**[[3ve6]] – VeevVCP NLS + importin<br />
 +
**[[6mui]], [[6mw9]], [[6mwc]], [[6mwv]], [[6mwx]], [[8eeu]], [[8eev]] – VeevVCP + antibody – Cryo EM<br />
 +
**[[8dec]], [[8dee]] – WeevVCP + envelope glycoproteins – Western equine encephalitis virus - Cryo EM<br />
*Virus coat protein by fiber diffraction
*Virus coat protein by fiber diffraction
Line 445: Line 493:
**[[1cgm]] – VCP – cucumber green mottle virus<br />
**[[1cgm]] – VCP – cucumber green mottle virus<br />
**[[1rmv]] - VCP + RNA – fibgrass mosaic virus<br />
**[[1rmv]] - VCP + RNA – fibgrass mosaic virus<br />
-
**[[1pfi]], [[2ifm]] – VCP – Pf1 virus<br />
+
**[[3pdm]] – VCP – hibiscus latent Singapore virus<br />
-
**[[1vtm]] - stmvVCP <br />
+
**[[1hgv]], [[1hgz]], [[1hh0]] – VCP – Thermus phage PH75<br />
 +
**[[2c0w]] – Fd1VCP – Enterobacteria phage fd<br />
 +
**[[2hi5]] – Fd1VCP – Cryo EM<br />
 +
**[[1ql1]] – prvVCP – Primolicivirus<br />
 +
**[[2klv]] – prvVCP – NMR<br />
*Virus coat protein of other viruses
*Virus coat protein of other viruses
Line 456: Line 508:
**[[1nov]] – VCP – Nodamura virus<br />
**[[1nov]] – VCP – Nodamura virus<br />
**[[4zpy]] – mvVCP Vp1 (mutant) - minute virus <br />
**[[4zpy]] – mvVCP Vp1 (mutant) - minute virus <br />
-
**[[1mvm]], [[1z1c]] – mvVCP VP2 + DNA <br />
 
**[[1z14]] – mvVCP Vp2<br />
**[[1z14]] – mvVCP Vp2<br />
**[[2xgk]] – mvVCP Vp2 (mutant) <br />
**[[2xgk]] – mvVCP Vp2 (mutant) <br />
-
**[[2bbv]] – VCP + RNA black beetle virus<br />
+
**[[7z5d]] – mvVCP Vp2 Cryo EM<br />
 +
**[[7z5e]], [[7z5f]] – mvVCP Vp2 (mutant) – Cryo EM<br />
**[[2kgf]] – mpmvVCP p27 N-terminal – Mason-Pfizer monkey virus - NMR<br />
**[[2kgf]] – mpmvVCP p27 N-terminal – Mason-Pfizer monkey virus - NMR<br />
**[[4ard]], [[4arg]] – mpmvVCP p27 – Cryo EM<BR />
**[[4ard]], [[4arg]] – mpmvVCP p27 – Cryo EM<BR />
**[[1vcp]], [[1vcq]] – sfvVCP – semliki forest virus<br />
**[[1vcp]], [[1vcq]] – sfvVCP – semliki forest virus<br />
**[[1dyl]] – sfvVCP – Cryo EM<br />
**[[1dyl]] – sfvVCP – Cryo EM<br />
-
**[[2yew]] - VCP + envelope glycoprotein – Barmah forest virus - Cryo EM<BR />
 
**[[1dnv]] – VCP – Galleria mellonella densovirus<br />
**[[1dnv]] – VCP – Galleria mellonella densovirus<br />
**[[2eia]], [[1eia]] – VCP p26 – equine infectious anemia virus<br />
**[[2eia]], [[1eia]] – VCP p26 – equine infectious anemia virus<br />
-
**[[1ep5]], [[1ep6]] – eevVCP C terminal – equine encephalitis virus<br />
 
-
**[[3j0c]], [[3j0g]] - eevVCP C terminal + envelope glycoprotein – Cryo EM<BR />
 
-
**[[3ve6]] – eevVCP NLS + importin<br />
 
-
**[[6mx4]], [[6mx7]], [[6odf]] – eevVCP – Cryo EM<br />
 
-
**[[6mui]], [[6mw9]], [[6mwc]], [[6mwv]], [[6mwx]] – eevVCP + antibody – Cryo EM<br />
 
-
**[[1f8v]] – VCP + RNA – pariacoto virus<br />
 
**[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br />
**[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br />
**[[2vf1]] – VCP – rabbit picobirnavirus<br />
**[[2vf1]] – VCP – rabbit picobirnavirus<br />
Line 484: Line 529:
**[[1wcd]], [[1wce]], [[2df7]], [[3fbm]], [[3ide]] – ibdvVCP Vp2 – infectious bursal disease virus<br />
**[[1wcd]], [[1wce]], [[2df7]], [[3fbm]], [[3ide]] – ibdvVCP Vp2 – infectious bursal disease virus<br />
**[[2r18]], [[2z7j]] – ibdvVCP Vp3<br />
**[[2r18]], [[2z7j]] – ibdvVCP Vp3<br />
-
**[[2qqp]] – VCP + RNA – Providence virus<br />
 
**[[4rft]], [[4rfu]], [[4wiz]] - VCP – grouper nervous necrosis virus<br />
**[[4rft]], [[4rfu]], [[4wiz]] - VCP – grouper nervous necrosis virus<br />
**[[6itb]], [[6itf]] – fhvVCP β - flock house virus - Cryo EM<br />
**[[6itb]], [[6itf]] – fhvVCP β - flock house virus - Cryo EM<br />
-
**[[4fsj]], [[4ftb]] - fhvVCP β+γ + RNA<br />
 
-
**[[3lob]] – fhvVCP (mutant) + RNA<br />
 
-
**[[4fte]], [[4fts]] – fhvVCP α (mutant) + RNA<br />
 
**[[3nap]], [[lzo]] – VCP – triatoma virus<br />
**[[3nap]], [[lzo]] – VCP – triatoma virus<br />
**[[2xgu]], [[2xgv]] – relvVCP N terminal – rabbit endogenous lentivirus<br />
**[[2xgu]], [[2xgv]] – relvVCP N terminal – rabbit endogenous lentivirus<br />
-
**[[2xgy]] – relvVCP N terminal + cyclophilin<br />
 
**[[3j1p]], [[3zue]] – rhdvVCP Vp60 - rabbit hemorrhagic disease virus – Cryo EM<BR />
**[[3j1p]], [[3zue]] – rhdvVCP Vp60 - rabbit hemorrhagic disease virus – Cryo EM<BR />
**[[4egt]], [[4ejr]], [[4x1w]], [[4x1x]], [[4x1z]] – rhdvVCP Vp60<BR />
**[[4egt]], [[4ejr]], [[4x1w]], [[4x1x]], [[4x1z]] – rhdvVCP Vp60<BR />
**[[3r0r]], [[5zju]] – pcvVCP 2 – pig circovirus<br />
**[[3r0r]], [[5zju]] – pcvVCP 2 – pig circovirus<br />
**[[3jci]], [[5zbo]], [[6e2r]], [[6e2x]], [[6e2z]], [[6e30]], [[6e32]], [[6e34]], [[6e39]], [[6lm3]] – pcvVCP 2 – Cryo EM<br />
**[[3jci]], [[5zbo]], [[6e2r]], [[6e2x]], [[6e2z]], [[6e30]], [[6e32]], [[6e34]], [[6e39]], [[6lm3]] – pcvVCP 2 – Cryo EM<br />
-
**[[6ola]] – pcvVCP 2 + DNA – Cryo EM<br />
 
-
**[[6l62]] – pcvVCP 2 + antibody – Cryo EM<br />
 
**[[6rpk]], [[6rpl]], [[6rpo]] – bcvVCP – bat circovirus - Cryo EM<br />
**[[6rpk]], [[6rpl]], [[6rpo]] – bcvVCP – bat circovirus - Cryo EM<br />
-
**[[1mqt]], [[1oot]] – VCP – swine vesicular disease virus<br />
+
**[[1mqt]], [[1oop]] – VCP – swine vesicular disease virus<br />
**[[3s6p]] – VCP – Helicoverpa armigera stunt virus<br />
**[[3s6p]] – VCP – Helicoverpa armigera stunt virus<br />
**[[3m8l]] – FcvVCP – feline calicivirus<br />
**[[3m8l]] – FcvVCP – feline calicivirus<br />
**[[4pb6]] – FcvVCP Vp1 <br />
**[[4pb6]] – FcvVCP Vp1 <br />
**[[6gsh]] – FcvVCP Vp1 – Cryo EM<br />
**[[6gsh]] – FcvVCP Vp1 – Cryo EM<br />
-
**[[6gsi]] – FcvVCP Vp1+Vp2 + junctional adhesion molecule – Cryo EM<br />
+
**[[7bjp]] – VCP – calicivirus – Cryo EM<br />
**[[6ojn]] – VCP - singapore grouper iridovirus - Cryo EM<br />
**[[6ojn]] – VCP - singapore grouper iridovirus - Cryo EM<br />
**[[6rj0]] – VCP – Atlantic cod nervous necrosis virus – Cryo EM<br />
**[[6rj0]] – VCP – Atlantic cod nervous necrosis virus – Cryo EM<br />
**[[6rj0]] – osgnnvVCP – orange-spotted grouper nervous necrosis virus – Cryo EM<br />
**[[6rj0]] – osgnnvVCP – orange-spotted grouper nervous necrosis virus – Cryo EM<br />
**[[4rft]], [[4rfu]], [[4wiz]] – osgnnvVCP <br />
**[[4rft]], [[4rfu]], [[4wiz]] – osgnnvVCP <br />
-
**[[3j9x]] – VCP – Sulfolobus islandicus rod-shaped virus <br />
+
**[[3f2e]], [[3j9x]] – VCP – Sulfolobus islandicus rod-shaped virus <br />
 +
**[[8a5t]] – VCP – L-A virus - Cryo EM<br />
 +
**[[6yfd]], [[6yff]], [[6yfg]] – VCP – Beihai levi-like virus <br />
 +
**[[6yft]], [[6yfu]] – VCP – Wenzhou levi-like virus <br />
 +
**[[2bbd]] - stivVCP – Sulfolobus turreted icosahedral virus <BR />
 +
*Virus coat protein of other viruses’ complexes
 +
**[[1mvm]], [[1z1c]] – mvVCP VP2 + DNA <br />
 +
**[[2bbv]] – VCP + RNA – black beetle virus<br />
 +
**[[2yew]] - VCP + envelope glycoprotein – Barmah forest virus - Cryo EM<BR />
 +
**[[1f8v]] – VCP + RNA – pariacoto virus<br />
 +
**[[2qqp]] – VCP + RNA – Providence virus<br />
 +
**[[4fsj]], [[4ftb]] - fhvVCP β+γ + RNA<br />
 +
**[[3lob]] – fhvVCP (mutant) + RNA<br />
 +
**[[4fte]], [[4fts]] – fhvVCP α (mutant) + RNA<br />
 +
**[[2xgy]] – relvVCP N terminal + cyclophilin<br />
 +
**[[6ola]] – pcvVCP 2 + DNA – Cryo EM<br />
 +
**[[6l62]] – pcvVCP 2 + antibody – Cryo EM<br />
 +
**[[6gsi]] – FcvVCP Vp1+Vp2 + junctional adhesion molecule – Cryo EM<br />
 +
**[[7wco]] - VCP + envelope glycoproteins – Cryo EM<BR />
 +
**[[3j31]] - stivVCP + A223 penton base + A55 membrane protein + C381 turret protein – Sulfolobus turreted icosahedral virus – Cryo EM<BR />
 +
 
 +
*Phage coat protein
 +
 
 +
**[[1cjd]], [[1hqn]], [[1hx6]] – PCP – Enterobacteria phage PRD1<br />
 +
**[[1fdm]], [[3knq]] – Fd1PCP <br />
 +
**[[8ch5]] – Fd1PCP – Cryo EM<br />
 +
**[[1nh4]] – Fd1PCP – NMR<br />
 +
**[[8b3o]], [[8b3p]], [[8b3q]] – PCP – Enterobacteria phage f1 – Cryo EM<br />
 +
**[[1fr5]] – PCP – Enterobacteria phage fr <br />
 +
**[[1una]] – PCP – Enterobacteria phage ga <br />
 +
**[[2xyy]], [[3iyh]] – PCP – Enterobacteria phage p22 – Cryo EM<br />
 +
**[[8ixj]], [[8ixk]], [[8ixl]], [[8jwt]], [[8jww]], [[8jwx]] – M13PCP – Bacteriophage M13 – Cryo EM<br />
 +
**[[2cpb]], [[2cps]], [[2mjz]] – M13PCP – NMR<br />
 +
**[[6yf9]], [[6yfa]], [[6yfb]], [[6yfc]], [[6yfe]], [[6yfh]], [[6yfl]], [[6yfj]], [[6yfk]], [[6yfm]], [[6yfn]], [[6yfo]], [[6yfp]], [[6yfq]], [[6yfr]], [[6yfs]] – PCP – Leviviridae<br />
 +
**[[1msc]], [[1zdk]], [[2ms2]], [[2wbh]] – MS2PCP – ''Escherichia'' phage MS2<br />
 +
**[[4bp7]], [[6rrs]], [[6rrt]] – MS2PCP – Cryo EM<br />
 +
**[[4zor]] – MS2PCP (mutant) <br />
 +
**[[1aq3]], [[1u1y]], [[1zdh]], [[1zdi]], [[1zdj]], [[2bu1]], [[2c4q]], [[2c4z]], [[2c50]], [[2c51]], [[2iz8]], [[2iz9]], [[2izn]], [[2vtu]], [[6msf]] – MS2PCP + RNA <br />
 +
**[[1aq4]], [[1zse]], [[2b2d]], [[2b2e]], [[2b2g]], [[2bny]], [[2bq5]], [[2bs0]], [[2bs1]] – MS2PCP (mutant) + RNA <br />
 +
**[[5tc1]] – MS2PCP + maturation protein + RNA – Cryo EM<br />
 +
**[[5kip]], [[5vly]], [[5vlz]], [[7lge]], [[7lgf]], [[7lgg]], [[7lgh]], [[7lhd]], [[8feh]] – bqbPCP - Bacteriophage Qbeta – Cryo EM<br />
 +
**[[4l8h]] – bqbPCP + RNA<br />
 +
**[[1zn5]] – pppf1VCP - NMR<br />
 +
**[[6a7f]] – PCP – Filamentous phage – Cryo EM<br />
 +
**[[1dwn]], [[1pfi]], [[1ql2]], [[2ifm]], [[2qud]], [[2vf9]] – pmpVCP – ''Pseudomonas'' phage <br />
 +
**[[6n4v]] – pmpVCP – Cryo EM<br />
 +
**[[8tux]] – pmpVCP + RNA – Cryo EM<br />
 +
**[[2qux]], [[4ang]] – pmpVCP + RNA <br />
 +
**[[4an5]] – PCP – Bacillus phage spp1 – Cryo EM<br />
 +
**[[2m5s]], [[6mpo]] – lvPCP I domain – Lederbergvirus – NMR<br />
 +
**[[2xyz]], [[3iyi]] – lvPCP – Cryo EM<br />
 +
**[[5jzr]] – acpVCP – ''Acinetobacter'' phage - NMR<br />
 +
**[[5fs4]] – acpVCP <br />
 +
**[[5lqp]], [[8toc]], [[8tw2]], [[8twc]] – acpVCP – Cryo EM<br />
 +
**[[1pjf]] – prvVCP – NMR<br />
 +
**[[6tuq]] – prvVCP – Cryo EM<br />
 +
**[[6tup]] – prvVCP + DNA – Cryo EM<br />
 +
**[[6yf7]] – VCP – Marine phage AC <br />
 +
**[[4eo0]] – VCP pilus binding domain – ''Salmonella'' phage IKe <br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D structures of virus coat proteins

Updated on 01-April-2024 - For a general description of the protein see Virus coat protein

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Personal tools