This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1b8f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:55, 3 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1b8f.png|left|200px]]
 
-
{{STRUCTURE_1b8f| PDB=1b8f | SCENE= }}
+
==Histidine ammonia-lyase (HAL) from Pseudomonas putida==
-
 
+
<StructureSection load='1b8f' size='340' side='right'caption='[[1b8f]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
===Histidine ammonia-lyase (HAL) from Pseudomonas putida===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1b8f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B8F FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_10220322}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MDO:{2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>MDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b8f OCA], [https://pdbe.org/1b8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b8f RCSB], [https://www.ebi.ac.uk/pdbsum/1b8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b8f ProSAT]</span></td></tr>
-
[[1b8f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B8F OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/HUTH_PSEPU HUTH_PSEPU]
-
<ref group="xtra">PMID:010220322</ref><ref group="xtra">PMID:015548745</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Histidine ammonia-lyase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b8/1b8f_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b8f ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas putida]]
[[Category: Pseudomonas putida]]
-
[[Category: Schulz, G E.]]
+
[[Category: Schulz GE]]
-
[[Category: Schwede, T F.]]
+
[[Category: Schwede TF]]
-
[[Category: Ammonia-lyase]]
+
-
[[Category: Histidine degradation]]
+
-
[[Category: Lyase]]
+

Current revision

Histidine ammonia-lyase (HAL) from Pseudomonas putida

PDB ID 1b8f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools