This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ibh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:01, 3 April 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ibh.png|left|200px]]
 
-
<!--
+
==X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT M41I==
-
The line below this paragraph, containing "STRUCTURE_1ibh", creates the "Structure Box" on the page.
+
<StructureSection load='1ibh' size='340' side='right'caption='[[1ibh]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ibh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photobacterium_leiognathi_subsp._leiognathi Photobacterium leiognathi subsp. leiognathi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IBH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1ibh| PDB=1ibh | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ibh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ibh OCA], [https://pdbe.org/1ibh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ibh RCSB], [https://www.ebi.ac.uk/pdbsum/1ibh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ibh ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SODC_PHOLE SODC_PHOLE] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/1ibh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ibh ConSurf].
 +
<div style="clear:both"></div>
-
===X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT M41I===
+
==See Also==
-
 
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11327787}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 11327787 is the PubMed ID number.
+
[[Category: Photobacterium leiognathi subsp. leiognathi]]
-
-->
+
[[Category: Battistoni A]]
-
{{ABSTRACT_PUBMED_11327787}}
+
[[Category: Bolognesi M]]
-
 
+
[[Category: Bordo D]]
-
==About this Structure==
+
[[Category: D'Orazio M]]
-
1IBH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Photobacterium_leiognathi Photobacterium leiognathi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IBH OCA].
+
[[Category: Desideri A]]
-
 
+
[[Category: Milani M]]
-
==Reference==
+
[[Category: O'Neill P]]
-
Single mutations at the subunit interface modulate copper reactivity in Photobacterium leiognathi Cu,Zn superoxide dismutase., Stroppolo ME, Pesce A, D'Orazio M, O'Neill P, Bordo D, Rosano C, Milani M, Battistoni A, Bolognesi M, Desideri A, J Mol Biol. 2001 May 4;308(3):555-63. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11327787 11327787]
+
[[Category: Pesce A]]
-
[[Category: Photobacterium leiognathi]]
+
[[Category: Rosano C]]
-
[[Category: Single protein]]
+
[[Category: Stroppolo ME]]
-
[[Category: Superoxide dismutase]]
+
-
[[Category: Battistoni, A.]]
+
-
[[Category: Bolognesi, M.]]
+
-
[[Category: Bordo, D.]]
+
-
[[Category: Desideri, A.]]
+
-
[[Category: Milani, M.]]
+
-
[[Category: Neill, P O.]]
+
-
[[Category: Orazio, M D.]]
+
-
[[Category: Pesce, A.]]
+
-
[[Category: Rosano, C.]]
+
-
[[Category: Stroppolo, M E.]]
+
-
[[Category: Prokaryotic superoxide dismutase]]
+
-
[[Category: Subunit interaction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 10:42:42 2008''
+

Current revision

X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT M41I

PDB ID 1ibh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ibh"
Personal tools