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1jae

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[[Image:1jae.gif|left|200px]]
 
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==STRUCTURE OF TENEBRIO MOLITOR LARVAL ALPHA-AMYLASE==
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The line below this paragraph, containing "STRUCTURE_1jae", creates the "Structure Box" on the page.
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<StructureSection load='1jae' size='340' side='right'caption='[[1jae]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1jae]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tenebrio_molitor Tenebrio molitor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JAE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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{{STRUCTURE_1jae| PDB=1jae | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jae OCA], [https://pdbe.org/1jae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jae RCSB], [https://www.ebi.ac.uk/pdbsum/1jae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jae ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AMY_TENMO AMY_TENMO]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ja/1jae_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jae ConSurf].
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<div style="clear:both"></div>
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'''STRUCTURE OF TENEBRIO MOLITOR LARVAL ALPHA-AMYLASE'''
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==See Also==
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*[[Amylase 3D structures|Amylase 3D structures]]
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__TOC__
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==Overview==
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</StructureSection>
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The three-dimensional structure of the alpha-amylase from Tenebrio molitor larvae (TMA) has been determined by molecular replacement techniques using diffraction data of a crystal of space group P212121 (a=51.24 A; b=93.46 A; c=96.95 A). The structure has been refined to a crystallographic R-factor of 17.7% for 58,219 independent reflections in the 7.0 to 1.64 A resolution range, with root-mean-square deviations of 0.008 A for bond lengths and 1.482 degrees for bond angles. The final model comprises all 471 residues of TMA, 261 water molecules, one calcium cation and one chloride anion. The electron density confirms that the N-terminal glutamine residue has undergone a post-transitional modification resulting in a stable 5-oxo-proline residue. The X-ray structure of TMA provides the first three-dimensional model of an insect alpha-amylase.The monomeric enzyme exhibits an elongated shape approximately 75 Ax46 Ax40 A and consists of three distinct domains, in line with models for alpha-amylases from microbial, plant and mammalian origin. However, the structure of TMA reflects in the substrate and inhibitor binding region a remarkable difference from mammalian alpha-amylases: the lack of a highly flexible, glycine-rich loop, which has been proposed to be involved in a "trap-release" mechanism of substrate hydrolysis by mammalian alpha-amylases. The structural differences between alpha-amylases of various origins might explain the specificity of inhibitors directed exclusively against insect alpha-amylases.
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[[Category: Large Structures]]
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==About this Structure==
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1JAE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Tenebrio_molitor Tenebrio molitor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JAE OCA].
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==Reference==
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Crystal structure of yellow meal worm alpha-amylase at 1.64 A resolution., Strobl S, Maskos K, Betz M, Wiegand G, Huber R, Gomis-Ruth FX, Glockshuber R, J Mol Biol. 1998 May 8;278(3):617-28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9600843 9600843]
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[[Category: Alpha-amylase]]
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[[Category: Single protein]]
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[[Category: Tenebrio molitor]]
[[Category: Tenebrio molitor]]
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[[Category: Betz, M.]]
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[[Category: Betz M]]
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[[Category: Frank, G.]]
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[[Category: Frank G]]
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[[Category: Glockshuber, R.]]
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[[Category: Glockshuber R]]
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[[Category: Gomis-Rueth, F X.]]
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[[Category: Gomis-Rueth FX]]
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[[Category: Huber, R.]]
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[[Category: Huber R]]
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[[Category: Maskos, K.]]
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[[Category: Maskos K]]
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[[Category: Strobl, S.]]
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[[Category: Strobl S]]
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[[Category: Wiegand, G.]]
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[[Category: Wiegand G]]
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[[Category: 4-glucan-4-glucanohydrolase]]
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[[Category: Alpha-1]]
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[[Category: Alpha-amylase]]
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[[Category: Carbohydrate metabolism]]
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[[Category: Glycosidase]]
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[[Category: Hydrolase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 20:58:37 2008''
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Current revision

STRUCTURE OF TENEBRIO MOLITOR LARVAL ALPHA-AMYLASE

PDB ID 1jae

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