This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jta

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:04, 3 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1jta.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Pectate Lyase A (C2 form)==
-
The line below this paragraph, containing "STRUCTURE_1jta", creates the "Structure Box" on the page.
+
<StructureSection load='1jta' size='340' side='right'caption='[[1jta]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jta]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dickeya_chrysanthemi Dickeya chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JTA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JTA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1jta| PDB=1jta | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jta FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jta OCA], [https://pdbe.org/1jta PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jta RCSB], [https://www.ebi.ac.uk/pdbsum/1jta PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jta ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Pectate Lyase A (C2 form)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PLYA_DICCH PLYA_DICCH] Involved in maceration and soft-rotting of plant tissue.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12037303}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12037303 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/1jta_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12037303}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1JTA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JTA OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jta ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Structure of pectate lyase A: comparison to other isoforms., Thomas LM, Doan CN, Oliver RL, Yoder MD, Acta Crystallogr D Biol Crystallogr. 2002 Jun;58(Pt 6 Pt 2):1008-15. Epub, 2002 May 29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12037303 12037303]
+
</StructureSection>
-
[[Category: Erwinia chrysanthemi]]
+
[[Category: Dickeya chrysanthemi]]
-
[[Category: Pectate lyase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Doan CN]]
-
[[Category: Doan, C N.]]
+
[[Category: Oliver RL]]
-
[[Category: Oliver, R L.]]
+
[[Category: Thomas LM]]
-
[[Category: Thomas, L M.]]
+
[[Category: Yoder MD]]
-
[[Category: Yoder, M D.]]
+
-
[[Category: Parallel beta helix beta-elimination mechanism]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 20:46:09 2008''
+

Current revision

Crystal Structure of Pectate Lyase A (C2 form)

PDB ID 1jta

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools