This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1lyc
From Proteopedia
(Difference between revisions)
m (Protected "1lyc" [edit=sysop:move=sysop]) |
|||
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1lyc.png|left|200px]] | ||
| - | + | ==The impact of the physical and chemical enviroment on the molecular structure of Coprinus cinereus peroxidase== | |
| - | + | <StructureSection load='1lyc' size='340' side='right'caption='[[1lyc]], [[Resolution|resolution]] 1.57Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1lyc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Coprinopsis_cinerea Coprinopsis cinerea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LYC FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lyc OCA], [https://pdbe.org/1lyc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lyc RCSB], [https://www.ebi.ac.uk/pdbsum/1lyc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lyc ProSAT]</span></td></tr> |
| - | [[1lyc]] is a 2 chain structure with sequence from [ | + | </table> |
| - | + | == Function == | |
| - | == | + | [https://www.uniprot.org/uniprot/PER_COPCI PER_COPCI] |
| - | < | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/1lyc_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lyc ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Coprinopsis cinerea]] | [[Category: Coprinopsis cinerea]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Harris | + | [[Category: Harris P]] |
| - | [[Category: Houborg | + | [[Category: Houborg K]] |
| - | [[Category: Larsen | + | [[Category: Larsen S]] |
| - | [[Category: Petersen | + | [[Category: Petersen JFW]] |
| - | [[Category: Poulsen | + | [[Category: Poulsen J-CN]] |
| - | [[Category: Rowland | + | [[Category: Rowland P]] |
| - | [[Category: Schneider | + | [[Category: Schneider P]] |
| - | [[Category: Vind | + | [[Category: Vind J]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
The impact of the physical and chemical enviroment on the molecular structure of Coprinus cinereus peroxidase
| |||||||||||
