This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mvb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:07, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1mvb.png|left|200px]]
 
-
<!--
+
==STRUCTURE OF A PROTEIN CAPSID OF THE T59S MUTANT OF PHAGE MS2==
-
The line below this paragraph, containing "STRUCTURE_1mvb", creates the "Structure Box" on the page.
+
<StructureSection load='1mvb' size='340' side='right'caption='[[1mvb]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1mvb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_MS2 Escherichia phage MS2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MVB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mvb OCA], [https://pdbe.org/1mvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mvb RCSB], [https://www.ebi.ac.uk/pdbsum/1mvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mvb ProSAT]</span></td></tr>
-
{{STRUCTURE_1mvb| PDB=1mvb | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===STRUCTURE OF A PROTEIN CAPSID OF THE T59S MUTANT OF PHAGE MS2===
+
[https://www.uniprot.org/uniprot/CAPSD_BPMS2 CAPSD_BPMS2] Self-assembles to form the T=3 icosahedral virus shell that protects the viral nucleic acid. Acts as a translational repressor by binding with high specificity to a single stem-loop structure in the genomic RNA that contains the initiation codon of the gene for the viral replicase. Involved in virus assembly through the interaction between a capsid protein dimer and the multiple packaging signals present in the RNA genome.<ref>PMID:16531233</ref> <ref>PMID:18662904</ref> <ref>PMID:26608810</ref> <ref>PMID:8254664</ref> <ref>PMID:9245600</ref> <ref>PMID:9469847</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9469847}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9469847 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mv/1mvb_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_9469847}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mvb ConSurf].
-
1MVB is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacterio_phage_ms2 Enterobacterio phage ms2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MVB OCA].
+
<div style="clear:both"></div>
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:9469847</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Enterobacterio phage ms2]]
+
</StructureSection>
-
[[Category: Liljas, L.]]
+
[[Category: Escherichia phage MS2]]
-
[[Category: Stonehouse, N J.]]
+
[[Category: Large Structures]]
-
[[Category: Valegard, K.]]
+
[[Category: Liljas L]]
-
[[Category: Vandenworm, S.]]
+
[[Category: Stonehouse NJ]]
-
[[Category: Bacteriophage coat protein]]
+
[[Category: Valegard K]]
-
[[Category: Icosahedral virus]]
+
[[Category: Vandenworm S]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 21:50:26 2009''
+

Current revision

STRUCTURE OF A PROTEIN CAPSID OF THE T59S MUTANT OF PHAGE MS2

PDB ID 1mvb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mvb"
Personal tools