This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1s06

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:13, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1s06.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the R253K Mutant of 7,8-Diaminopelargonic Acid Synthase==
-
The line below this paragraph, containing "STRUCTURE_1s06", creates the "Structure Box" on the page.
+
<StructureSection load='1s06' size='340' side='right'caption='[[1s06]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1s06]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S06 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S06 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_1s06| PDB=1s06 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s06 OCA], [https://pdbe.org/1s06 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s06 RCSB], [https://www.ebi.ac.uk/pdbsum/1s06 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s06 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BIOA_ECOLI BIOA_ECOLI] Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor.<ref>PMID:1092681</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s0/1s06_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s06 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the R253K Mutant of 7,8-Diaminopelargonic Acid Synthase===
+
==See Also==
-
 
+
*[[7%2C8-diaminopelargonic acid synthase 3D structures|7%2C8-diaminopelargonic acid synthase 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14756557}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 14756557 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_14756557}}
+
-
 
+
-
==About this Structure==
+
-
1S06 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S06 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:14756557</ref><references group="xtra"/>
+
-
[[Category: Adenosylmethionine--8-amino-7-oxononanoate transaminase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Eliot, A C.]]
+
[[Category: Large Structures]]
-
[[Category: Famm, K.]]
+
[[Category: Eliot AC]]
-
[[Category: Kirsch, J F.]]
+
[[Category: Famm K]]
-
[[Category: Sandmark, J.]]
+
[[Category: Kirsch JF]]
-
[[Category: Schneider, G.]]
+
[[Category: Sandmark J]]
-
[[Category: Aminotransferase]]
+
[[Category: Schneider G]]
-
[[Category: Fold type i]]
+
-
[[Category: Homodimer]]
+
-
[[Category: Subclass ii]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:58:25 2009''
+

Current revision

Crystal Structure of the R253K Mutant of 7,8-Diaminopelargonic Acid Synthase

PDB ID 1s06

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1s06"
Personal tools