This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1s0a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1s0a" [edit=sysop:move=sysop])
Current revision (06:13, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1s0a.png|left|200px]]
 
-
{{STRUCTURE_1s0a| PDB=1s0a | SCENE= }}
+
==Crystal Structure of the Y17F Mutant of 7,8-Diaminopelargonic Acid Synthase==
 +
<StructureSection load='1s0a' size='340' side='right'caption='[[1s0a]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1s0a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S0A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S0A FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.71&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s0a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s0a OCA], [https://pdbe.org/1s0a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s0a RCSB], [https://www.ebi.ac.uk/pdbsum/1s0a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s0a ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BIOA_ECOLI BIOA_ECOLI] Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor.<ref>PMID:1092681</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s0/1s0a_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s0a ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the Y17F Mutant of 7,8-Diaminopelargonic Acid Synthase===
+
==See Also==
-
 
+
*[[7%2C8-diaminopelargonic acid synthase 3D structures|7%2C8-diaminopelargonic acid synthase 3D structures]]
-
{{ABSTRACT_PUBMED_14756557}}
+
== References ==
-
 
+
<references/>
-
==About this Structure==
+
__TOC__
-
[[1s0a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S0A OCA].
+
</StructureSection>
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:014756557</ref><references group="xtra"/>
+
-
[[Category: Adenosylmethionine--8-amino-7-oxononanoate transaminase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Eliot, A C.]]
+
[[Category: Large Structures]]
-
[[Category: Famm, K.]]
+
[[Category: Eliot AC]]
-
[[Category: Kirsch, J F.]]
+
[[Category: Famm K]]
-
[[Category: Sandmark, J.]]
+
[[Category: Kirsch JF]]
-
[[Category: Schneider, G.]]
+
[[Category: Sandmark J]]
-
[[Category: Aminotransferase]]
+
[[Category: Schneider G]]
-
[[Category: Fold type i]]
+
-
[[Category: Homodimer]]
+
-
[[Category: Subclass ii]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of the Y17F Mutant of 7,8-Diaminopelargonic Acid Synthase

PDB ID 1s0a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools