1vcr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1vcr" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vcr, resolution 9.5&Aring;" /> '''An icosahedral assemb...)
Current revision (06:17, 3 April 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vcr.gif|left|200px]]<br /><applet load="1vcr" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1vcr, resolution 9.5&Aring;" />
 
-
'''An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes'''<br />
 
-
==Overview==
+
==An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes==
-
When the light-harvesting chlorophyll a/b protein complex (LHC-II) from, pea thylakoid membranes is co-crystallized with native lipids, an, octahedral crystal that exhibits no birefringence is obtained. Cryogenic, electron micrographs of a crystal edge showed the crystal to be made up of, hollow spherical assemblies with a diameter of 250 A. X-ray diffraction, data at 9.5 A resolution revealed the spherical shell of LHC-II to have, icosahedral symmetry. A T = 1 icosahedral model of LHC-II, in which the, stromal surface of the protein faces outward, was constructed using the, previously reported structure of the LHC-II trimer [Kuhlbrandt et al., (1994), Nature (London), 367, 614-621]. The present result shows the first, example of a well ordered three-dimensional crystal of icosahedral, proteoliposomes.
+
<StructureSection load='1vcr' size='340' side='right'caption='[[1vcr]], [[Resolution|resolution]] 9.50&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[1vcr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VCR FirstGlance]. <br>
-
1VCR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum] with CLA and CHL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VCR OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 9.5&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CHL:CHLOROPHYLL+B'>CHL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vcr OCA], [https://pdbe.org/1vcr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vcr RCSB], [https://www.ebi.ac.uk/pdbsum/1vcr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vcr ProSAT]</span></td></tr>
-
An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes., Hino T, Kanamori E, Shen JR, Kouyama T, Acta Crystallogr D Biol Crystallogr. 2004 May;60(Pt 5):803-9. Epub 2004, Apr 21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15103124 15103124]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CB22_PEA CB22_PEA] The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.<ref>PMID:2174365</ref> May channel protons produced in the catalytic Mn center of water oxidation into the thylakoid lumen.<ref>PMID:2174365</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vc/1vcr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vcr ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pisum sativum]]
[[Category: Pisum sativum]]
-
[[Category: Single protein]]
+
[[Category: Hino T]]
-
[[Category: Hino, T.]]
+
[[Category: Kanamori E]]
-
[[Category: Kanamori, E.]]
+
[[Category: Kouyama T]]
-
[[Category: Kouyama, T.]]
+
[[Category: Shen J-R]]
-
[[Category: Shen, J.R.]]
+
-
[[Category: CHL]]
+
-
[[Category: CLA]]
+
-
[[Category: antenna]]
+
-
[[Category: chlorophyll]]
+
-
[[Category: icosahedron]]
+
-
[[Category: lhc-ii]]
+
-
[[Category: photosystem]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:35:33 2007''
+

Current revision

An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes

PDB ID 1vcr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1vcr"
Personal tools