This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xea

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:18, 3 April 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a Gfo/Idh/MocA family oxidoreductase from Vibrio cholerae==
==Crystal structure of a Gfo/Idh/MocA family oxidoreductase from Vibrio cholerae==
-
<StructureSection load='1xea' size='340' side='right' caption='[[1xea]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
+
<StructureSection load='1xea' size='340' side='right'caption='[[1xea]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xea]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XEA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XEA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xea]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XEA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XEA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA1048 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xea OCA], [https://pdbe.org/1xea PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xea RCSB], [https://www.ebi.ac.uk/pdbsum/1xea PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xea ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1xea TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xea OCA], [http://pdbe.org/1xea PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xea RCSB], [http://www.ebi.ac.uk/pdbsum/1xea PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1xea TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9KKQ4_VIBCH Q9KKQ4_VIBCH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xea_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/1xea_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillo virgola del koch trevisan 1884]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Vibrio cholerae]]
-
[[Category: Kniewel, R]]
+
[[Category: Burley SK]]
-
[[Category: Lima, C D]]
+
[[Category: Kniewel R]]
-
[[Category: Structural genomic]]
+
[[Category: Lima CD]]
-
[[Category: Rajashankar, K R]]
+
[[Category: R Rajashankar K]]
-
[[Category: Reynes, J A]]
+
[[Category: Reynes JA]]
-
[[Category: Gfo/idh/moca family oxidoreductase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: T1536]]
+
-
[[Category: Vca1048]]
+

Current revision

Crystal structure of a Gfo/Idh/MocA family oxidoreductase from Vibrio cholerae

PDB ID 1xea

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools