This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2aqq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:23, 3 April 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2aqq.jpg|left|200px]]
 
-
{{Structure
+
==CU/ZN superoxid dismutate from neisseria meningitidis K91E mutant==
-
|PDB= 2aqq |SIZE=350|CAPTION= <scene name='initialview01'>2aqq</scene>, resolution 1.65&Aring;
+
<StructureSection load='2aqq' size='340' side='right'caption='[[2aqq]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[2aqq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AQQ FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
|GENE= sodC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=487 Neisseria meningitidis])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2aqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aqq OCA], [https://pdbe.org/2aqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2aqq RCSB], [https://www.ebi.ac.uk/pdbsum/2aqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2aqq ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[2aqm|2AQM]], [[2aqn|2AQN]], [[2aqp|2AQP]], [[2aqr|2AQR]], [[2aqs|2AQS]], [[2aqt|2AQT]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2aqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aqq OCA], [http://www.ebi.ac.uk/pdbsum/2aqq PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2aqq RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/SODC_NEIMA SODC_NEIMA] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aq/2aqq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2aqq ConSurf].
 +
<div style="clear:both"></div>
-
'''CU/ZN superoxid dismutate from neisseria meningitidis K91E mutant'''
+
==See Also==
-
 
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2AQQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AQQ OCA].
+
[[Category: Large Structures]]
[[Category: Neisseria meningitidis]]
[[Category: Neisseria meningitidis]]
-
[[Category: Single protein]]
+
[[Category: Bruns CK]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Cabelli DE]]
-
[[Category: Bruns, C K.]]
+
[[Category: Cao Z]]
-
[[Category: Cabelli, D E.]]
+
[[Category: DiDonato M]]
-
[[Category: Cao, Z.]]
+
[[Category: Getzoff ED]]
-
[[Category: DiDonato, M.]]
+
[[Category: Kassmann CJ]]
-
[[Category: Getzoff, E D.]]
+
[[Category: Kroll JS]]
-
[[Category: Kassmann, C J.]]
+
[[Category: Tabatabai LB]]
-
[[Category: Kroll, J S.]]
+
-
[[Category: Tabatabai, L B.]]
+
-
[[Category: cu/zn superoxide dismutase]]
+
-
[[Category: electrostatic guidance]]
+
-
[[Category: neisseria meningitidi]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:56:04 2008''
+

Current revision

CU/ZN superoxid dismutate from neisseria meningitidis K91E mutant

PDB ID 2aqq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2aqq"
Personal tools