This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2b7u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:24, 3 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2b7u.png|left|200px]]
 
-
<!--
+
==Ribosome inactivating protein type 1 from Charybdis maritima AGG==
-
The line below this paragraph, containing "STRUCTURE_2b7u", creates the "Structure Box" on the page.
+
<StructureSection load='2b7u' size='340' side='right'caption='[[2b7u]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2b7u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Squilla_maritima Squilla maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B7U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B7U FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
-
{{STRUCTURE_2b7u| PDB=2b7u | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b7u OCA], [https://pdbe.org/2b7u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b7u RCSB], [https://www.ebi.ac.uk/pdbsum/2b7u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b7u ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RIP_DRIMA RIP_DRIMA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/2b7u_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b7u ConSurf].
 +
<div style="clear:both"></div>
-
===Ribosome inactivating protein type 1 from Charybdis maritima AGG===
+
==See Also==
-
 
+
*[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16817896}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16817896 is the PubMed ID number.
+
[[Category: Squilla maritima]]
-
-->
+
[[Category: Gessmann R]]
-
{{ABSTRACT_PUBMED_16817896}}
+
[[Category: Petratos K]]
-
 
+
-
==About this Structure==
+
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B7U OCA].
+
-
 
+
-
==Reference==
+
-
Isolation, characterization, sequencing and crystal structure of charybdin, a type 1 ribosome-inactivating protein from Charybdis maritima agg., Touloupakis E, Gessmann R, Kavelaki K, Christofakis E, Petratos K, Ghanotakis DF, FEBS J. 2006 Jun;273(12):2684-92. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16817896 16817896]
+
-
[[Category: RRNA N-glycosylase]]
+
-
[[Category: Gessmann, R.]]
+
-
[[Category: Petratos, K.]]
+
-
[[Category: Ribosome inactivating protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 19:12:00 2008''
+

Current revision

Ribosome inactivating protein type 1 from Charybdis maritima AGG

PDB ID 2b7u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2b7u"
Personal tools