This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3h9m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:38, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3h9m.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of para-aminobenzoate synthetase, component I from Cytophaga hutchinsonii==
-
The line below this paragraph, containing "STRUCTURE_3h9m", creates the "Structure Box" on the page.
+
<StructureSection load='3h9m' size='340' side='right'caption='[[3h9m]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3h9m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_ATCC_33406 Cytophaga hutchinsonii ATCC 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H9M FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTU:(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTU</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
{{STRUCTURE_3h9m| PDB=3h9m | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h9m OCA], [https://pdbe.org/3h9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h9m RCSB], [https://www.ebi.ac.uk/pdbsum/3h9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h9m ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3h9m TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of para-aminobenzoate synthetase, component I from Cytophaga hutchinsonii===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3H9M is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_atcc_33406 Cytophaga hutchinsonii atcc 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H9M OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h9/3h9m_consurf.spt"</scriptWhenChecked>
-
[[Category: Cytophaga hutchinsonii atcc 33406]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Atwell, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bain, K.]]
+
</jmolCheckbox>
-
[[Category: Burley, S K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h9m ConSurf].
-
[[Category: Do, J.]]
+
<div style="clear:both"></div>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Rutter, M.]]
+
</StructureSection>
-
[[Category: Sampathkumar, P.]]
+
[[Category: Cytophaga hutchinsonii ATCC 33406]]
-
[[Category: Sauder, J M.]]
+
[[Category: Large Structures]]
-
[[Category: Tarun, G.]]
+
[[Category: Atwell S]]
-
[[Category: Wasserman, S.]]
+
[[Category: Bain K]]
-
[[Category: Chu_1808]]
+
[[Category: Burley SK]]
-
[[Category: Component i]]
+
[[Category: Do J]]
-
[[Category: Cytophaga hutchinsonii]]
+
[[Category: Gheyi T]]
-
[[Category: Lyase]]
+
[[Category: Rutter M]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Sampathkumar P]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Sauder JM]]
-
[[Category: Nysgxrc]]
+
[[Category: Wasserman S]]
-
[[Category: Para-aminobenzoate synthetase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Yp_678417 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 1 09:41:01 2009''
+

Current revision

Crystal structure of para-aminobenzoate synthetase, component I from Cytophaga hutchinsonii

PDB ID 3h9m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools