This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3l6b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:40, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3l6b.png|left|200px]]
 
-
<!--
+
==X-ray crystal structure of human serine racemase in complex with malonate a potent inhibitor==
-
The line below this paragraph, containing "STRUCTURE_3l6b", creates the "Structure Box" on the page.
+
<StructureSection load='3l6b' size='340' side='right'caption='[[3l6b]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3l6b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L6B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L6B FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
{{STRUCTURE_3l6b| PDB=3l6b | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l6b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l6b OCA], [https://pdbe.org/3l6b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l6b RCSB], [https://www.ebi.ac.uk/pdbsum/3l6b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l6b ProSAT]</span></td></tr>
-
 
+
</table>
-
===X-ray crystal structure of human serine racemase in complex with malonate a potent inhibitor===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SRR_HUMAN SRR_HUMAN] Catalyzes the synthesis of D-serine from L-serine. D-serine is a key coagonist with glutamate at NMDA receptors. Has dehydratase activity towards both L-serine and D-serine.<ref>PMID:11054547</ref> <ref>PMID:20106978</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20106978}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20106978 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l6/3l6b_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20106978}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3L6B is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L6B OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l6b ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:20106978</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Serine racemase]]
+
[[Category: Large Structures]]
-
[[Category: Barker, J.]]
+
[[Category: Barker J]]
-
[[Category: Cesura, A.]]
+
[[Category: Cesura A]]
-
[[Category: Ebneth, A.]]
+
[[Category: Ebneth A]]
-
[[Category: Felicetti, B.]]
+
[[Category: Felicetti B]]
-
[[Category: Mack, V.]]
+
[[Category: Mack V]]
-
[[Category: Moraes, I.]]
+
[[Category: Moraes I]]
-
[[Category: Smith, M A.]]
+
[[Category: Smith MA]]
-
[[Category: Isomerase]]
+
-
[[Category: Plp]]
+
-
[[Category: Pyridoxal phosphate]]
+
-
[[Category: Serine racemase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 10:27:09 2010''
+

Current revision

X-ray crystal structure of human serine racemase in complex with malonate a potent inhibitor

PDB ID 3l6b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools