This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mbb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 3 April 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3mbb.png|left|200px]]
 
-
<!--
+
==Crystal structure of StSPL - apo form, after treatment with semicarbazide==
-
The line below this paragraph, containing "STRUCTURE_3mbb", creates the "Structure Box" on the page.
+
<StructureSection load='3mbb' size='340' side='right'caption='[[3mbb]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mbb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Symbiobacterium_thermophilum Symbiobacterium thermophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MBB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MBB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.051&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TY2:3-AMINO-L-TYROSINE'>TY2</scene></td></tr>
-
{{STRUCTURE_3mbb| PDB=3mbb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mbb OCA], [https://pdbe.org/3mbb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mbb RCSB], [https://www.ebi.ac.uk/pdbsum/3mbb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mbb ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of StSPL - apo form, after treatment with semicarbazide===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q67PY4_SYMTH Q67PY4_SYMTH]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20696404}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20696404 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mb/3mbb_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20696404}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3mbb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Symbiobacterium_thermophilum Symbiobacterium thermophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MBB OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mbb ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:020696404</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Sphinganine-1-phosphate aldolase]]
+
[[Category: Large Structures]]
[[Category: Symbiobacterium thermophilum]]
[[Category: Symbiobacterium thermophilum]]
-
[[Category: Bourquin, F.]]
+
[[Category: Bourquin F]]
-
[[Category: Capitani, G.]]
+
[[Category: Capitani G]]
-
[[Category: Grutter, M G.]]
+
[[Category: Grutter MG]]
-
[[Category: Carboxy-lyase activity]]
+
-
[[Category: Lyase]]
+
-
[[Category: Pyridoxal phosphate]]
+

Current revision

Crystal structure of StSPL - apo form, after treatment with semicarbazide

PDB ID 3mbb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mbb"
Personal tools