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1j8b
From Proteopedia
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==Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function== | ==Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function== | ||
| - | <StructureSection load='1j8b' size='340' side='right' caption='[[1j8b]], [[Resolution|resolution]] 1.75Å' scene=''> | + | <StructureSection load='1j8b' size='340' side='right'caption='[[1j8b]], [[Resolution|resolution]] 1.75Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1j8b]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1j8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J8B FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j8b OCA], [https://pdbe.org/1j8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j8b RCSB], [https://www.ebi.ac.uk/pdbsum/1j8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j8b ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Y442_HAEIN Y442_HAEIN] Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (By similarity).[HAMAP-Rule:MF_00274] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j8/1j8b_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j8/1j8b_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j8b ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Haemophilus influenzae | + | [[Category: Haemophilus influenzae Rd KW20]] |
| - | [[Category: Eisenstein | + | [[Category: Large Structures]] |
| - | [[Category: Herzberg | + | [[Category: Eisenstein E]] |
| - | [[Category: Howard | + | [[Category: Herzberg O]] |
| - | [[Category: Lim | + | [[Category: Howard A]] |
| - | [[Category: Parsons | + | [[Category: Lim K]] |
| - | + | [[Category: Parsons JF]] | |
| - | [[Category: Tempcyzk | + | [[Category: Tempcyzk A]] |
| - | [[Category: Toedt | + | [[Category: Toedt J]] |
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Current revision
Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function
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