This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jc4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:50, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1jc4.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Se-Met Methylmalonyl-CoA Epimerase==
-
The line below this paragraph, containing "STRUCTURE_1jc4", creates the "Structure Box" on the page.
+
<StructureSection load='1jc4' size='340' side='right'caption='[[1jc4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jc4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Propionibacterium_freudenreichii_subsp._shermanii Propionibacterium freudenreichii subsp. shermanii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JC4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JC4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1jc4| PDB=1jc4 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jc4 OCA], [https://pdbe.org/1jc4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jc4 RCSB], [https://www.ebi.ac.uk/pdbsum/1jc4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jc4 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Se-Met Methylmalonyl-CoA Epimerase===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8VQN0_PROFR Q8VQN0_PROFR]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_11470438}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11470438 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jc/1jc4_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_11470438}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1JC4 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Propionibacterium_freudenreichii_subsp._shermanii Propionibacterium freudenreichii subsp. shermanii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JC4 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jc4 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:11470438</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Methylmalonyl-CoA epimerase]]
+
[[Category: Large Structures]]
[[Category: Propionibacterium freudenreichii subsp. shermanii]]
[[Category: Propionibacterium freudenreichii subsp. shermanii]]
-
[[Category: Baker, E N.]]
+
[[Category: Baker EN]]
-
[[Category: Baker, H M.]]
+
[[Category: Baker HM]]
-
[[Category: Carthy, A A.Mc.]]
+
[[Category: Mc Carthy AA]]
-
[[Category: Patchett, M L.]]
+
[[Category: Patchett ML]]
-
[[Category: Shewry, S C.]]
+
[[Category: Shewry SC]]
-
[[Category: Methylmalonyl-coa]]
+
-
[[Category: Vicinal oxygen chelate superfamily]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:23:33 2009''
+

Current revision

Crystal Structure of Se-Met Methylmalonyl-CoA Epimerase

PDB ID 1jc4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools