This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jfl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:51, 3 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1jfl.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA==
-
The line below this paragraph, containing "STRUCTURE_1jfl", creates the "Structure Box" on the page.
+
<StructureSection load='1jfl' size='340' side='right'caption='[[1jfl]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jfl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JFL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JFL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jfl OCA], [https://pdbe.org/1jfl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jfl RCSB], [https://www.ebi.ac.uk/pdbsum/1jfl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jfl ProSAT]</span></td></tr>
-
{{STRUCTURE_1jfl| PDB=1jfl | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA===
+
[https://www.uniprot.org/uniprot/RACD_PYRHO RACD_PYRHO]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12051922}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12051922 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jf/1jfl_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_12051922}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jfl ConSurf].
-
1JFL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JFL OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:12051922</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Aspartate racemase]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: Pyrococcus horikoshii]]
+
[[Category: Iwata K]]
-
[[Category: Iwata, K.]]
+
[[Category: Kawarabayasi Y]]
-
[[Category: Kawarabayasi, Y.]]
+
[[Category: Kita A]]
-
[[Category: Kita, A.]]
+
[[Category: Liu LJ]]
-
[[Category: Liu, L J.]]
+
[[Category: Miki K]]
-
[[Category: Miki, K.]]
+
[[Category: Yohda M]]
-
[[Category: Yohda, M.]]
+
-
[[Category: Alpha-beta structure]]
+
-
[[Category: Homo-dimer]]
+
-
[[Category: Homologous domain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:12:30 2009''
+

Current revision

CRYSTAL STRUCTURE DETERMINATION OF ASPARTATE RACEMASE FROM AN ARCHAEA

PDB ID 1jfl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools