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1kzu

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[[Image:1kzu.gif|left|200px]]<br /><applet load="1kzu" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1kzu, resolution 2.5&Aring;" />
 
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'''INTEGRAL MEMBRANE PERIPHERAL LIGHT HARVESTING COMPLEX FROM RHODOPSEUDOMONAS ACIDOPHILA STRAIN 10050'''<br />
 
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==Overview==
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==INTEGRAL MEMBRANE PERIPHERAL LIGHT HARVESTING COMPLEX FROM RHODOPSEUDOMONAS ACIDOPHILA STRAIN 10050==
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The refined structure of the peripheral light-harvesting complex from, Rhodopseudomonas acidophila strain 10050 reveals a membrane protein with, protein-protein interactions in the trans-membrane region exclusively of a, van der Waals nature. The dominant factors in the formation of the complex, appear to be extramembranous hydrogen bonds (suggesting that each, apoprotein must achieve a fold close to its final structure in order to, oligomerize), protein-pigment and pigment-pigment interactions within the, membrane-spanning region. The pigment molecules are known to play an, important role in the formation of bacterial light-harvesters, and their, extensive mediation of structural contacts within the membrane bears this, out. Amino acid residues determining the secondary structure of the, apoproteins influence the oligomeric state of the complex. The assembly of, the pigment array is governed by the apoproteins of LH2. The particular, environment of each of the pigment molecules is, however, influenced, directly by few protein contacts. These contacts produce functional, effects that are not attributable to a single cause, e.g. the arrangement, of an overlapping cycle of chromophores not only provides energy, delocalisation and storage properties, but also has consequences for, oligomer size, pigment distortion modes and pigment chemical environment, all of which modify the precise function of the complex. The evaluation of, site energies for the pigment array requires the consideration of a number, of effects, including heterogeneous pigment distortions, charge, distributions in the local environment and mechanical interactions.
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<StructureSection load='1kzu' size='340' side='right'caption='[[1kzu]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1kzu]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodoblastus_acidophilus Rhodoblastus acidophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KZU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KZU FirstGlance]. <br>
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1KZU is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rhodoblastus_acidophilus Rhodoblastus acidophilus] with <scene name='pdbligand=RG1:'>RG1</scene> and <scene name='pdbligand=BCL:'>BCL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=BB:B800+Bacteriochlorophyll+Coordinating+Residues'>BB</scene>, <scene name='pdbsite=BBA:B850+Bacteriochlorophyll+Coordinating+Residues'>BBA</scene>, <scene name='pdbsite=BBB:B850+Bacteriochlorophyll+Coordinating+Residues'>BBB</scene>, <scene name='pdbsite=EE:B800+Bacteriochlorophyll+Coordinating+Residues'>EE</scene>, <scene name='pdbsite=EEA:B850+Bacteriochlorophyll+Coordinating+Residues'>EEA</scene>, <scene name='pdbsite=EEB:B850+Bacteriochlorophyll+Coordinating+Residues'>EEB</scene>, <scene name='pdbsite=HH:B800+Bacteriochlorophyll+Coordinating+Residues'>HH</scene>, <scene name='pdbsite=HHA:B850+Bacteriochlorophyll+Coordinating+Residues'>HHA</scene> and <scene name='pdbsite=HHB:B850+Bacteriochlorophyll+Coordinating+Residues'>HHB</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KZU OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=RG1:RHODOPIN+B-D-GLUCOSIDE'>RG1</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kzu OCA], [https://pdbe.org/1kzu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kzu RCSB], [https://www.ebi.ac.uk/pdbsum/1kzu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kzu ProSAT]</span></td></tr>
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Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions., Prince SM, Papiz MZ, Freer AA, McDermott G, Hawthornthwaite-Lawless AM, Cogdell RJ, Isaacs NW, J Mol Biol. 1997 May 2;268(2):412-23. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9159480 9159480]
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</table>
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[[Category: Protein complex]]
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== Function ==
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[https://www.uniprot.org/uniprot/LHA4_RHOAC LHA4_RHOAC] Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/1kzu_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kzu ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Rhodoblastus acidophilus]]
[[Category: Rhodoblastus acidophilus]]
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[[Category: Cogdell, R.J.]]
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[[Category: Cogdell RJ]]
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[[Category: Freer, A.A.]]
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[[Category: Freer AA]]
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[[Category: Hawthornthwaite-Lawless, A.M.]]
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[[Category: Hawthornthwaite-Lawless AM]]
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[[Category: Isaacs, N.W.]]
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[[Category: Isaacs NW]]
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[[Category: Mcdermott, G.]]
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[[Category: Mcdermott G]]
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[[Category: Papiz, M.Z.]]
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[[Category: Papiz MZ]]
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[[Category: Prince, S.M.]]
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[[Category: Prince SM]]
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[[Category: BCL]]
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[[Category: RG1]]
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[[Category: antenna complex]]
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[[Category: bacteriochlorophyll]]
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[[Category: lh2 complex]]
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[[Category: light-harvesting protein]]
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[[Category: purple bacteria]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:53:09 2008''
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Current revision

INTEGRAL MEMBRANE PERIPHERAL LIGHT HARVESTING COMPLEX FROM RHODOPSEUDOMONAS ACIDOPHILA STRAIN 10050

PDB ID 1kzu

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