This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1lfp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:09, 3 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1lfp.png|left|200px]]
 
-
<!--
+
==Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus==
-
The line below this paragraph, containing "STRUCTURE_1lfp", creates the "Structure Box" on the page.
+
<StructureSection load='1lfp' size='340' side='right'caption='[[1lfp]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1lfp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LFP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LFP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1lfp| PDB=1lfp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lfp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lfp OCA], [https://pdbe.org/1lfp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lfp RCSB], [https://www.ebi.ac.uk/pdbsum/1lfp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lfp ProSAT], [https://www.topsan.org/Proteins/BSGC/1lfp TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Y1575_AQUAE Y1575_AQUAE]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12060744}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12060744 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lf/1lfp_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12060744}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1LFP is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LFP OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lfp ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus., Shin DH, Yokota H, Kim R, Kim SH, Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):7980-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12060744 12060744]
+
</StructureSection>
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Large Structures]]
-
[[Category: Kim, R.]]
+
[[Category: Kim R]]
-
[[Category: Kim, S H.]]
+
[[Category: Kim SH]]
-
[[Category: Shin, D H.]]
+
[[Category: Shin DH]]
-
[[Category: Yokota, H.]]
+
[[Category: Yokota H]]
-
[[Category: Berkeley structural genomics center]]
+
-
[[Category: Bsgc structure funded by nih]]
+
-
[[Category: Hypothetical]]
+
-
[[Category: New fold]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Thermostability]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:56:11 2008''
+

Current revision

Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus

PDB ID 1lfp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1lfp"
Personal tools