This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ln6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 10 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ln6.png|left|200px]]
 
-
<!--
+
==STRUCTURE OF BOVINE RHODOPSIN (Metarhodopsin II)==
-
The line below this paragraph, containing "STRUCTURE_1ln6", creates the "Structure Box" on the page.
+
<StructureSection load='1ln6' size='340' side='right'caption='[[1ln6]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ln6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LN6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LN6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
{{STRUCTURE_1ln6| PDB=1ln6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ln6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ln6 OCA], [https://pdbe.org/1ln6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ln6 RCSB], [https://www.ebi.ac.uk/pdbsum/1ln6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ln6 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/OPSD_BOVIN OPSD_BOVIN] Photoreceptor required for image-forming vision at low light intensity. Required for photoreceptor cell viability after birth. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change leading to G-protein activation and release of all-trans retinal (By similarity).<ref>PMID:16908857</ref> <ref>PMID:17060607</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ln/1ln6_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ln6 ConSurf].
 +
<div style="clear:both"></div>
-
===STRUCTURE OF BOVINE RHODOPSIN (Metarhodopsin II)===
+
==See Also==
-
 
+
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12044163}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 12044163 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Bos taurus]]
-
{{ABSTRACT_PUBMED_12044163}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Albert AD]]
-
==About this Structure==
+
[[Category: Birge RR]]
-
1LN6 is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LN6 OCA]. Relevant biological numbers for this protein at [http://bionumbers.hms.harvard.edu/search.aspx?log=y&task=searchbytrmorg&trm=%22rhodopsin%22&org=%25 B10NUMB3R5]
+
[[Category: Choi G]]
-
 
+
[[Category: Galan JF]]
-
==Reference==
+
[[Category: Landin J]]
-
<ref group="xtra">PMID:12044163</ref><references group="xtra"/>
+
[[Category: Yeagle PL]]
-
[[Category: Albert, A D.]]
+
-
[[Category: Birge, R R.]]
+
-
[[Category: Choi, G.]]
+
-
[[Category: Galan, J F.]]
+
-
[[Category: Landin, J.]]
+
-
[[Category: Yeagle, P L.]]
+
-
[[Category: G-protein coupled receptor]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Metarhodopsin ii]]
+
-
[[Category: Rhodopsin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon May 25 07:54:01 2009''
+

Current revision

STRUCTURE OF BOVINE RHODOPSIN (Metarhodopsin II)

PDB ID 1ln6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ln6"
Personal tools