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1m7d

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{{Seed}}
 
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[[Image:1m7d.png|left|200px]]
 
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<!--
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==Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide==
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The line below this paragraph, containing "STRUCTURE_1m7d", creates the "Structure Box" on the page.
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<StructureSection load='1m7d' size='340' side='right'caption='[[1m7d]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1m7d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M7D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M7D FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MAG:BETA-METHYL-N-ACETYL-D-GLUCOSAMINE'>MAG</scene>, <scene name='pdbligand=RAE:2-DEOXY-ALPHA-RHAMNOSE'>RAE</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
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{{STRUCTURE_1m7d| PDB=1m7d | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m7d OCA], [https://pdbe.org/1m7d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m7d RCSB], [https://www.ebi.ac.uk/pdbsum/1m7d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m7d ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A2NHM3_MOUSE A2NHM3_MOUSE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m7/1m7d_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m7d ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide===
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==See Also==
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_12427018}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 12427018 is the PubMed ID number.
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[[Category: Mus musculus]]
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[[Category: Bundle DR]]
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{{ABSTRACT_PUBMED_12427018}}
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[[Category: Chervenak MC]]
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[[Category: Johnson MA]]
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==About this Structure==
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[[Category: Pinto BM]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M7D OCA].
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[[Category: Quiocho FA]]
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[[Category: Vyas MN]]
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==Reference==
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[[Category: Vyas NK]]
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Molecular recognition of oligosaccharide epitopes by a monoclonal Fab specific for Shigella flexneri Y lipopolysaccharide: X-ray structures and thermodynamics., Vyas NK, Vyas MN, Chervenak MC, Johnson MA, Pinto BM, Bundle DR, Quiocho FA, Biochemistry. 2002 Nov 19;41(46):13575-86. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12427018 12427018]
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[[Category: Bundle, D R.]]
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[[Category: Chervenak, M C.]]
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[[Category: Johnson, M A.]]
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[[Category: Pinto, B M.]]
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[[Category: Quiocho, F A.]]
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[[Category: Vyas, M N.]]
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[[Category: Vyas, N K.]]
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[[Category: Anti-carbohydrate antibody]]
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[[Category: Fab-carbohydrate interaction]]
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[[Category: Shigella o-antigen]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 23:22:25 2008''
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Current revision

Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide

PDB ID 1m7d

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