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1mc2

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(New page: 200px<br /><applet load="1mc2" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mc2, resolution 0.85&Aring;" /> '''monomeric LYS-49 pho...)
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[[Image:1mc2.gif|left|200px]]<br /><applet load="1mc2" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1mc2, resolution 0.85&Aring;" />
 
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'''monomeric LYS-49 phospholipase A2 homologue purified from AG'''<br />
 
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==Overview==
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==monomeric LYS-49 phospholipase A2 homologue purified from AG==
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The crystal structure of acutohaemolysin, a lysine 49 phospholipase A2, protein with 1010 non-hydrogen protein atoms and 232 water molecules, has, been determined ab initio using the program SnB at an ultrahigh resolution, of 0.8 A. The lack of catalytic activity appears to be related to the, presence of Phe102, which prevents the access of substrate to the active, site. The substitution of tryptophan for leucine at residue 10 interferes, with dimer formation and may be responsible for the additional loss of, hemolytic activity. The ultrahigh resolution of the experimental, diffraction data permits alternative conformations to be modeled for, disordered residues, many hydrogen atoms to be located, the protonation of, the Nepsilon2 atom in the catalytic residue His48 to be observed, experimentally, and the density of the bonding electrons to be analyzed in, detail.
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<StructureSection load='1mc2' size='340' side='right'caption='[[1mc2]], [[Resolution|resolution]] 0.85&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1mc2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinagkistrodon_acutus Deinagkistrodon acutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MC2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MC2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.85&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mc2 OCA], [https://pdbe.org/1mc2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mc2 RCSB], [https://www.ebi.ac.uk/pdbsum/1mc2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mc2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PA2H_DEIAC PA2H_DEIAC] Snake venom phospholipase A2 homolog that shows myotoxic activity. Lacks both catalytic and direct hemolytic activity.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mc/1mc2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mc2 ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1MC2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Deinagkistrodon_acutus Deinagkistrodon acutus] with IPA as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MC2 OCA].
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*[[Phospholipase A2 3D structures|Phospholipase A2 3D structures]]
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*[[Phospholipase A2 homolog|Phospholipase A2 homolog]]
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==Reference==
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__TOC__
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The crystal structure of a novel, inactive, lysine 49 PLA2 from Agkistrodon acutus venom: an ultrahigh resolution, AB initio structure determination., Liu Q, Huang Q, Teng M, Weeks CM, Jelsch C, Zhang R, Niu L, J Biol Chem. 2003 Oct 17;278(42):41400-8. Epub 2003 Jul 19. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12871974 12871974]
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</StructureSection>
[[Category: Deinagkistrodon acutus]]
[[Category: Deinagkistrodon acutus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Huang, Q.Q.]]
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[[Category: Huang QQ]]
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[[Category: Jelsch, C.]]
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[[Category: Jelsch C]]
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[[Category: Liu, Q.]]
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[[Category: Liu Q]]
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[[Category: Niu, L.W.]]
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[[Category: Niu LW]]
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[[Category: Teng, M.K.]]
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[[Category: Teng MK]]
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[[Category: Weeks, C.M.]]
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[[Category: Weeks CM]]
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[[Category: Zhang, R.G.]]
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[[Category: Zhang RG]]
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[[Category: IPA]]
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[[Category: agkistrodon acutus]]
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[[Category: snake venom]]
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[[Category: ys49-phospholipase a2]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:19:26 2007''
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Current revision

monomeric LYS-49 phospholipase A2 homologue purified from AG

PDB ID 1mc2

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