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1mdo

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[[Image:1mdo.png|left|200px]]
 
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==Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate==
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The line below this paragraph, containing "STRUCTURE_1mdo", creates the "Structure Box" on the page.
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<StructureSection load='1mdo' size='340' side='right'caption='[[1mdo]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1mdo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MDO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PMP:4-DEOXY-4-AMINOPYRIDOXAL-5-PHOSPHATE'>PMP</scene></td></tr>
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{{STRUCTURE_1mdo| PDB=1mdo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mdo OCA], [https://pdbe.org/1mdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mdo RCSB], [https://www.ebi.ac.uk/pdbsum/1mdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mdo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ARNB_SALTY ARNB_SALTY] Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides (By similarity).[HAMAP-Rule:MF_01167]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/1mdo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mdo ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate===
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==See Also==
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*[[Aminotransferase 3D structures|Aminotransferase 3D structures]]
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__TOC__
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<!--
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_12429098}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 12429098 is the PubMed ID number.
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
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[[Category: Badger J]]
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{{ABSTRACT_PUBMED_12429098}}
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[[Category: Buchanan MD]]
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[[Category: Buchanan SG]]
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==About this Structure==
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[[Category: Christopher JA]]
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[[1mdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDO OCA].
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[[Category: Gajiwala K]]
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[[Category: Hendle J]]
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==Reference==
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[[Category: Muller-Dieckmann H-J]]
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<ref group="xtra">PMID:12429098</ref><ref group="xtra">PMID:16021622</ref><references group="xtra"/>
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[[Category: Newman JM]]
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[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
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[[Category: Noland BW]]
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[[Category: Badger, J.]]
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[[Category: Rutter ME]]
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[[Category: Buchanan, M D.]]
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[[Category: Sanderson WE]]
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[[Category: Buchanan, S G.]]
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[[Category: Sauder JM]]
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[[Category: Christopher, J A.]]
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[[Category: Tresser J]]
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[[Category: Gajiwala, K.]]
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[[Category: Wright T]]
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[[Category: Hendle, J.]]
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[[Category: Muller-Dieckmann, H J.]]
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[[Category: Newman, J M.]]
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[[Category: Noland, B W.]]
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[[Category: Rutter, M E.]]
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[[Category: Sanderson, W E.]]
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[[Category: Tresser, J.]]
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[[Category: Wright, T.]]
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[[Category: Type 1 aminotransferase fold]]
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Current revision

Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate

PDB ID 1mdo

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